virheat: test-data/day_85.vcf annotate

annotate test-data/day_85.vcf @ 1:30584e80d61e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit 5ae40d4f44fc2716f3c37a9fad2077a0d0230a6d

author	iuc
date	Mon, 03 Jun 2024 09:37:09 +0000
parents	d2a1ac520392
children

rev	line source
0 d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	1 ##fileformat=VCFv4.0
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	2 ##fileDate=20220927
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 20 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.001 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512:1-7475 -o /data/jwd01/main/050/996/50996339/tmp/lofreq2_call_parallel_00t3eed/0.vcf.gz reads.bam
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	4 ##reference=reference.fa
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_68,Description="Minimum SNV Quality (Phred) 68">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_52,Description="Minimum Indel Quality (Phred) 52">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_75,Description="Minimum SNV Quality (Phred) 75">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_60,Description="Minimum Indel Quality (Phred) 60">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.100000,Description="Minimum allele frequency 0.100000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_20,Description="Minimum Coverage 20">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	19 ##SnpEffVersion="4.3t (build 2017-11-24 10:18), by Pablo Cingolani"
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-intron -no-upstream -stats /data/jwd01/main/050/996/50996574/outputs/galaxy_dataset_61c05207-723c-481f-a33c-93acf8a6685f.dat -csvStats /data/jwd01/main/050/996/50996574/outputs/galaxy_dataset_609dc569-c14e-4725-861e-c0faa56ea1a3.dat SARS-CoV-2 /data/dnb07/galaxy_db/files/3/d/e/dataset_3dec9a4b-cd72-4350-9252-e3ac4947f31b.dat "
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	25 NC_045512 509 . GGTCATGTTA G 24816.0 PASS AF=0.969084;DP=841;DP4=72,85,462,353;HRUN=2;SB=18;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatg/gtg\|GHVM82V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	26 NC_045512 670 . T G 25606.0 PASS AF=0.942105;DP=760;DP4=1,0,393,363;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agT/agG\|S135R\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	27 NC_045512 900 . C T 49314.0 PASS AF=0.949125;DP=1828;DP4=2,2,914,905;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S212L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	28 NC_045512 1980 . G T 10608.0 PASS AF=0.895062;DP=324;DP4=0,3,167,153;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G572V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	29 NC_045512 2790 . C T 11585.0 PASS AF=0.924419;DP=344;DP4=0,0,172,170;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T842I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	30 NC_045512 3037 . C T 32298.0 PASS AF=0.957929;DP=927;DP4=1,2,464,457;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	31 NC_045512 4184 . G A 17648.0 PASS AF=0.933464;DP=511;DP4=0,0,288,218;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1307S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	32 NC_045512 4276 . C T 14453.0 PASS AF=0.856838;DP=468;DP4=0,0,358,106;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y1337\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	33 NC_045512 4321 . C T 4973.0 PASS AF=0.407229;DP=415;DP4=233,1,92,89;SB=373;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A1352\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	34 NC_045512 5302 . A G 2648.0 PASS AF=0.153736;DP=696;DP4=281,288,58,66;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcA/gcG\|A1679\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	35 NC_045512 5628 . C T 14736.0 PASS AF=0.923077;DP=442;DP4=2,2,214,221;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T1788M\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	36 NC_045512 6354 . C T 9316.0 PASS AF=0.575453;DP=497;DP4=194,0,181,121;SB=310;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S2030L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	37 NC_045512 9344 . C T 21975.0 PASS AF=0.939778;DP=631;DP4=0,0,309,319;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3027F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	38 NC_045512 9424 . A G 20883.0 PASS AF=0.922204;DP=617;DP4=0,1,312,300;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtA/gtG\|V3053\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	39 NC_045512 9534 . C T 44514.0 PASS AF=0.894855;DP=1341;DP4=1,0,686,648;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T3090I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	40 NC_045512 9866 . C T 31818.0 PASS AF=0.954190;DP=895;DP4=1,1,504,388;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L3201F\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	41 NC_045512 10029 . C T 40172.0 PASS AF=0.923801;DP=1168;DP4=0,0,542,624;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T3255I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	42 NC_045512 10198 . C T 19006.0 PASS AF=0.917563;DP=558;DP4=0,0,290,264;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3311\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	43 NC_045512 10447 . G A 14949.0 PASS AF=0.899329;DP=447;DP4=0,0,220,225;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R3394\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	44 NC_045512 10449 . C A 14477.0 PASS AF=0.861538;DP=455;DP4=4,11,222,217;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cAc\|P3395H\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	45 NC_045512 11287 . GTCTGGTTTT G 8782.0 PASS AF=0.975694;DP=288;DP4=30,31,138,143;HRUN=1;SB=0;INDEL;EFF=CODON_DELETION(MODERATE\|\|tctggtttt/\|SGF3675\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	46 NC_045512 12036 . C T 20280.0 PASS AF=0.917742;DP=620;DP4=1,1,282,333;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3924V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	47 NC_045512 12854 . C T 14821.0 PASS AF=0.845992;DP=474;DP4=0,6,234,233;SB=15;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P4197S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	48 NC_045512 12880 . C T 17325.0 PASS AF=0.968685;DP=479;DP4=0,1,232,246;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I4205\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	49 NC_045512 14408 . C T 49314.0 PASS AF=0.949393;DP=1482;DP4=0,3,709,768;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4720L\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	50 NC_045512 15451 . G A 36768.0 PASS AF=0.911172;DP=1092;DP4=1,0,606,468;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G5068S\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	51 NC_045512 15714 . C T 21744.0 PASS AF=0.948136;DP=617;DP4=1,3,318,293;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L5155\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	52 NC_045512 17410 . C T 7745.0 PASS AF=0.928889;DP=225;DP4=0,0,107,117;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R5721C\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	53 NC_045512 18163 . A G 13119.0 PASS AF=0.891626;DP=406;DP4=1,1,199,203;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ata/Gta\|I5972V\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	54 NC_045512 19955 . C T 49314.0 PASS AF=0.947122;DP=1494;DP4=0,0,747,741;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T6569I\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	55 NC_045512 20055 . A G 10686.0 PASS AF=0.902141;DP=327;DP4=20,0,148,159;SB=59;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaA/gaG\|E6602\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	56 NC_045512 20719 . C T 10811.0 PASS AF=0.932692;DP=312;DP4=1,2,166,141;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L6824\|7101\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	57 NC_045512 21618 . C T 37364.0 PASS AF=0.888987;DP=1135;DP4=0,6,560,553;SB=18;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T19I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	58 NC_045512 21632 . TTACCCCCTG T 32441.0 PASS AF=0.980080;DP=1004;DP4=55,42,469,515;HRUN=2;SB=9;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ttaccccctgca/tca\|LPPA24S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	59 NC_045512 21987 . G A 36002.0 PASS AF=0.907493;DP=1081;DP4=0,1,557,519;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G142D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	60 NC_045512 22200 . T G 16165.0 PASS AF=0.924843;DP=479;DP4=3,0,211,263;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTg/gGg\|V213G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	61 NC_045512 22578 . G A 19580.0 PASS AF=0.824508;DP=661;DP4=0,0,301,343;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G339D\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	62 NC_045512 22599 . G C 20362.0 PASS AF=0.902280;DP=614;DP4=0,0,300,306;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGa/aCa\|R346T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	63 NC_045512 22629 . A C 19818.0 PASS AF=0.902156;DP=603;DP4=0,1,307,293;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aCg\|K356T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	64 NC_045512 22664 . C A 18689.0 PASS AF=0.893428;DP=563;DP4=2,1,281,277;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cta/Ata\|L368I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	65 NC_045512 22674 . C T 18845.0 PASS AF=0.926916;DP=561;DP4=0,0,275,284;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S371F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	66 NC_045512 22679 . T C 19011.0 PASS AF=0.926056;DP=568;DP4=1,0,288,278;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S373P\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	67 NC_045512 22686 . C T 17628.0 PASS AF=0.950851;DP=529;DP4=0,3,273,253;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S375F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	68 NC_045512 22688 . A G 16023.0 PASS AF=0.869141;DP=512;DP4=0,1,269,238;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T376A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	69 NC_045512 22716 . C T 19370.0 PASS AF=0.939068;DP=558;DP4=0,0,301,254;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T385I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	70 NC_045512 22775 . G A 49314.0 PASS AF=0.797604;DP=2337;DP4=173,208,921,1033;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Aat\|D405N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	71 NC_045512 22786 . A C 49314.0 PASS AF=0.895996;DP=1923;DP4=4,10,908,996;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agA/agC\|R408S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	72 NC_045512 22792 . C T 49314.0 PASS AF=0.946617;DP=1892;DP4=0,1,900,987;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I410\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	73 NC_045512 22813 . G T 49314.0 PASS AF=0.922457;DP=1986;DP4=2,1,957,1014;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K417N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	74 NC_045512 22882 . T G 37187.0 PASS AF=0.825487;DP=1232;DP4=5,2,668,550;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N440K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	75 NC_045512 22992 . G A 39520.0 PASS AF=0.943478;DP=1150;DP4=0,0,533,607;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGc/aAc\|S477N\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	76 NC_045512 22995 . C A 41015.0 PASS AF=0.971831;DP=1136;DP4=0,0,539,597;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aAa\|T478K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	77 NC_045512 23013 . A C 39263.0 PASS AF=0.911243;DP=1183;DP4=7,7,556,609;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gCa\|E484A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	78 NC_045512 23040 . A G 38673.0 PASS AF=0.916594;DP=1151;DP4=2,5,543,597;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q493R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	79 NC_045512 23055 . A G 35683.0 PASS AF=0.902992;DP=1103;DP4=2,2,535,559;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q498R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	80 NC_045512 23063 . A T 37185.0 PASS AF=0.957733;DP=1041;DP4=0,0,521,520;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N501Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	81 NC_045512 23075 . T C 33766.0 PASS AF=0.872827;DP=1093;DP4=5,2,561,522;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y505H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	82 NC_045512 23403 . A G 13054.0 PASS AF=0.951743;DP=373;DP4=0,1,178,194;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	83 NC_045512 23525 . C T 10850.0 PASS AF=0.873900;DP=341;DP4=1,0,165,171;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H655Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	84 NC_045512 23599 . T G 44250.0 PASS AF=0.941223;DP=1276;DP4=3,1,664,607;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaG\|N679K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	85 NC_045512 23604 . C A 41230.0 PASS AF=0.902244;DP=1248;DP4=0,0,651,595;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cAt\|P681H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	86 NC_045512 23781 . T C 24650.0 PASS AF=0.918256;DP=734;DP4=0,0,354,379;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTg/aCg\|M740T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	87 NC_045512 23854 . C A 18022.0 PASS AF=0.911071;DP=551;DP4=0,3,263,285;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaC/aaA\|N764K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	88 NC_045512 23948 . G T 18412.0 PASS AF=0.883929;DP=560;DP4=0,0,271,284;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D796Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	89 NC_045512 24424 . A T 44012.0 PASS AF=0.835790;DP=1425;DP4=6,32,729,656;SB=53;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caA/caT\|Q954H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	90 NC_045512 24469 . T A 49314.0 PASS AF=0.941802;DP=1598;DP4=4,0,824,765;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N969K\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	91 NC_045512 24966 . A G 25737.0 PASS AF=0.916237;DP=776;DP4=0,4,362,405;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aGc\|N1135S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	92 NC_045512 25000 . C T 23128.0 PASS AF=0.932836;DP=670;DP4=0,0,336,332;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1146\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	93 NC_045512 25584 . C T 34714.0 PASS AF=0.843556;DP=1125;DP4=1,17,617,486;SB=49;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acC/acT\|T64\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	94 NC_045512 26060 . C T 48795.0 PASS AF=0.959004;DP=1366;DP4=0,2,689,673;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T223I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	95 NC_045512 26195 . C T 17410.0 PASS AF=0.867621;DP=559;DP4=0,1,274,279;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T268M\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	96 NC_045512 26270 . C T 16029.0 PASS AF=0.877264;DP=497;DP4=1,1,252,235;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T9I\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	97 NC_045512 26408 . C T 37918.0 PASS AF=0.924915;DP=1172;DP4=0,0,574,561;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S55F\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	98 NC_045512 26577 . C G 23695.0 PASS AF=0.921316;DP=699;DP4=1,0,337,354;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q19E\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	99 NC_045512 26709 . G A 49314.0 PASS AF=0.946639;DP=1443;DP4=0,0,767,673;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A63T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	100 NC_045512 26801 . C T 47205.0 PASS AF=0.941005;DP=1373;DP4=2,1,682,684;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L93\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	101 NC_045512 26858 . C T 41810.0 PASS AF=0.962835;DP=1157;DP4=0,0,532,623;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F112\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	102 NC_045512 27259 . A C 49314.0 PASS AF=0.903539;DP=1752;DP4=0,4,732,1001;SB=8;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Agg/Cgg\|R20\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	103 NC_045512 27382 . G C 16412.0 PASS AF=0.903292;DP=486;DP4=1,0,237,242;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Cat\|D61H\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	104 NC_045512 27383 . A T 15885.0 PASS AF=0.877083;DP=480;DP4=0,1,238,233;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D61V\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	105 NC_045512 27384 . T C 16182.0 PASS AF=0.877800;DP=491;DP4=1,0,245,242;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D61\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	106 NC_045512 27481 . C A 21747.0 PASS AF=0.949429;DP=613;DP4=1,2,314,294;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Att\|L30I\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	107 NC_045512 27549 . C T 49314.0 PASS AF=0.901484;DP=1482;DP4=0,0,746,720;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N52\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	108 NC_045512 27807 . C T 16022.0 PASS AF=0.916143;DP=477;DP4=1,0,240,234;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Cta/Tta\|L18\|43\|ORF7b\|protein_coding\|CODING\|GU280_gp08\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	109 NC_045512 28271 . A T 49314.0 PASS AF=0.923592;DP=1793;DP4=1,10,893,886;SB=19
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	110 NC_045512 28307 . G A 49314.0 PASS AF=0.852097;DP=1812;DP4=3,2,884,890;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A12T\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	111 NC_045512 28311 . C T 49314.0 PASS AF=0.829309;DP=1781;DP4=5,24,875,873;SB=32;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCc/cTc\|P13L\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	112 NC_045512 28361 . GGAGAACGCA G 40362.0 PASS AF=0.788374;DP=1531;DP4=239,97,491,716;HRUN=2;SB=226;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggagaacgcagt/ggt\|GERS30G\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	113 NC_045512 28483 . A G 24535.0 PASS AF=0.917663;DP=753;DP4=3,4,354,387;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q70\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	114 NC_045512 28657 . C T 49314.0 PASS AF=0.927105;DP=1948;DP4=3,2,1064,862;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D128\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	115 NC_045512 28881 . G A 29591.0 PASS AF=0.964242;DP=811;DP4=0,1,411,397;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGg/aAg\|R203K\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	116 NC_045512 28882 . G A 27445.0 PASS AF=0.918216;DP=807;DP4=0,1,408,394;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R203\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	117 NC_045512 28883 . G C 27530.0 PASS AF=0.907317;DP=820;DP4=2,0,413,402;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gga/Cga\|G204R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	118 NC_045512 29510 . A C 49314.0 PASS AF=0.902691;DP=1932;DP4=1,1,877,1050;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Agt/Cgt\|S413R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
d2a1ac520392 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat commit ed302b5ddedadffc87798b7216f1a331accce96e iuc parents: diff changeset	119 NC_045512 29733 . CGAGGCCACGCGGAGTACGATCGAGTG C 30334.0 PASS AF=0.994702;DP=755;DP4=144,132,273,478;HRUN=1;SB=52;INDEL

Mercurial > repos > iuc > virheat

annotate test-data/day_85.vcf @ 1:30584e80d61e draft