diff virhunter.xml @ 3:302332b914ef draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 58587e05f604590c70550e13fc51b7425e916ed4

--- a/virhunter.xml	Thu Jan 05 14:27:54 2023 +0000
+++ b/virhunter.xml	Sat Jan 14 21:08:33 2023 +0000
@@ -18,8 +18,8 @@
         --out_path '${predicted_fragments.extra_files_path}'
         --return_viral True
         --limit $limit
-    && cp '${predicted_fragments.extra_files_path}'/predicted_fragments.csv predicted_fragments.csv
-    && cp '${predicted_fragments.extra_files_path}'/predicted.csv predicted.csv
+    && cp '${predicted_fragments.extra_files_path}'/predicted_fragments.tsv predicted_fragments.tsv
+    && cp '${predicted_fragments.extra_files_path}'/predicted.tsv predicted.tsv
     && cp '${predicted_fragments.extra_files_path}'/viral.fasta viral.fasta
 
     ]]></command>
@@ -33,16 +33,16 @@
         <param argument="--limit" type="integer" min="0" value="750" label="Minimum contig length" help="Do not predict contigs shorter than this value. Default: 750" />
     </inputs>
     <outputs>
-        <data format="csv" name="predicted_fragments" from_work_dir="predicted_fragments.csv" label="${tool.name} on ${on_string}: predicted fragments"/>
-        <data format="csv" name="predicted" from_work_dir="predicted.csv" label="${tool.name} on ${on_string}: predicted "/>
+        <data format="tabular" name="predicted_fragments" from_work_dir="predicted_fragments.tsv" label="${tool.name} on ${on_string}: predicted fragments"/>
+        <data format="tabular" name="predicted" from_work_dir="predicted.tsv" label="${tool.name} on ${on_string}: predicted "/>
         <data format="fasta" name="viral" from_work_dir="viral.fasta" label="${tool.name} on ${on_string}: viral FASTA file" />
     </outputs>
     <tests>
         <test>
             <param name="fasta_file" value="viruses.fasta"/>
             <param name="weights" value="test"/>
-            <output name="predicted_fragments" file="predicted_fragments.csv"  ftype="csv" lines_diff="2"/>
-            <output name="predicted" file="predicted.csv"  ftype="csv" lines_diff="2"/>
+            <output name="predicted_fragments" file="predicted_fragments.tsv"  ftype="tabular" lines_diff="2"/>
+            <output name="predicted" file="predicted.tsv"  ftype="tabular" lines_diff="2"/>
             <output name="viral" file="viral.fasta"  ftype="fasta" lines_diff="2"/>
         </test>
     </tests>