diff test-data/HIV-output.fasta @ 0:0620360e441e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/virulign/ commit b18f2f0794274e906cf75c8ed07e1a7eb1c9b7f8

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/HIV-output.fasta	Thu Aug 14 17:13:56 2025 +0000
@@ -0,0 +1,216 @@
+>HIV-HXB2-gag HIV-HXB2-gag
+ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGG
+TTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAG
+CTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATA
+CTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAAT
+ACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCT
+TTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCT
+GACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGG
+CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAA
+GAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACC
+CCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATG
+TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCA
+GGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT
+AGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAA
+ATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACC
+AGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTC
+TATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACC
+TTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCG
+GCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCA
+AGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGA
+GGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCAC
+ACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
+CACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCC
+TACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAA
+GAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGAC
+AAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAA
+TAA
+>AY158535.1  HIV-1 strain 98ZA528 clone 6 from South Africa, complete genome
+ATGGGTGCGAGAGCGTCAATATTAAGAGGGGGAAAATTAGATACATGGGAGAAGATTAGG
+TTAAGGCCAGGGGGAAAGAAACAATATATGATAAAACATTTAGTATGGGCAAGCAGGGAG
+CTGGAAAAATTTGCACTTAACCCTGGCCTTTTAGAGACATCAGAAGGCTGTAAACAACTA
+ATGAGCCAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAGGTCATTATACAAC
+ACACTAGCAGTCCTCTATTGTGTACATGCAAAGATAGAGGTACGAGACACCAAGGAAGCC
+TTAGACAAAATAGAGGAAGAACAAAAGAAAAGTCAGCAAAAAACACAGCAGGCGAAAGAG
+GAT---------GACAGGAAGATCAGTCAAAATTATCCTATAGTACAGAATCTCCAAGGG
+CAAATGGTACATCAGGCCATATCACCTAGAACCTTGAATGCATGGGTAAAAGTAGTAGAG
+GAGAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACC
+CCACAAGATTTAAACACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATG
+TTAAAAGATACCATCAATGAGGAGGCTGCAGAATGGGATAGAACACATCCAGTACATGCA
+GGGCCTAATGCACCAGGCCAGTTAAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT
+AGTACCCTTCAGGAACAAATAGCATGGATGACAAATAACCCACCTATTCCAGTGGGAGAC
+ATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTC
+AGCATTTTGGATATAAGACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTC
+TTTAAAACTTTAAGAGCTGAACAAGCTACACAAGATGTAAAAAATTGGATGACAGACACC
+TTGTTGGTCCAAAATGCAAACCCAGATTGTAAGATCATTTTAAAAGGATTAGGACCAGGG
+GCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCACAAAGCA
+AGAGTGTTGGCTGAGGCAATGAGCCAA---ACAAACAATATGAACATAATGATGCAGAGA
+AGCAATTTTAAAGGCTCAAAAAGAATTGTTAAATGTTTTAACTGTGGCAAGGAAGGGCAC
+ATAGCCAGAAATTGCAGGGCTCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
+CACCAAATGAAAGACTGCACTGAAAGGCAGGCTAATTTTTTAGGGAAAATTTGGCCTTCC
+CACAAGGGGAGGCCAGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAG
+GAGAGCTTCAGGTTCGGG------GAGACAACCCCCGCTCCGAAGCAGGAGCTGAAAGAC
+AGGGAA------ACCCTAACTTCCCTCAAATCACTCTTTGGCAGCGACCCCTTGTCTCAA
+TAA
+>DQ275656.1  HIV-1 isolate 03ZAPS103MB2 from South Africa gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
+ATGGGTGCGAGAGCGTCAATATTAAGAGGCGGAAAATTAGATGCATGGGAAAGAATTAGG
+TTAAGGCCAGGGGGAAAGAAACATTATATGCTAAAACACCTAGTATGGGCAAGCAGGGAG
+CTGGAAAGATTTGCACTTAACCCAGGCCTTTTAGAAACATCAGCAGGCTGTAAACAAATA
+ATAAAGCAGCTACATCCAGCTCTTCAGATAGGAACAGAGGAACTTAAATCATTATACAAC
+ACAGTAGCAGTTCTCTATTGTGTACATGAAAAGATAGAGGTACGAGACACCAAGGAAGCC
+TTAGACAAGATAGAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAAAAGCG
+GCTGACGGA---------AACGTCAGTCAAAATTATCCTGTAGTGCAGAATCTCCAAGGG
+CAAATGGTACACCAGGCCATATCACCTAGAACTTTGAATGCATGGGTAAAAGTAATAGAG
+GAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTCACAGCATTATCAGAAGGAGCCACC
+CCCTCAGATTTAAACACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAGATG
+TTAAAAGATACCATCAATGAGGAGGCTGCAGAATGGGACAGAGTACATCCAGTACATGCA
+GGGCCTGTTGCACCAGGTCAAATGAGGGAACCTAGGGGAAGTGACATAGCAGGAACTACT
+AGTACCCTTCAGGAACAAATAGCATGGATGACAAGCAACCCACCTGTCCCAGTGGGAGAC
+ATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTC
+AGCATTTTAGACATAAAACAGGGGCCAAAGGAACCCTTCAGGGATTATGTAGATCGGTCC
+TTTAAGGTTTTAAGAGCTGAGCAAGCTACACAAGATGTAAAAAATTGGATGACAGACACC
+TTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAGGCATTAGGACCAGCA
+GCTTCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCACAAAGCA
+AGAATATTGGCTGAGGCAATGAGCCAA---GCAAACAGC---AACATAATGATGCAGAGA
+AGTAATTTTAAAGGACCTAGAAGAATTATTAAATGTTTCAACTGTGGCAAGGAGGGGCAC
+ATAGCCAAAAATTGCAGGGCCCCTAGAAAGAAAGGCTGTTGGAAATGTGGAAGAGAAGGA
+CACCAAATGAAAGACTGTTCTGAAAGGCGGGCTAATTTTTTAGGGAAAATTTGGCCTTCC
+CTCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCA
+GAGAGCTTCAGG------TTCGAGGAAGTGACCCCCACTCCGAAGCAGGAGCCGAAAGAC
+AGGGAA------CCCTTAACTTCCCTCAAATCACTCTTTGGCAGCGACCCCTTGTCTCAA
+TAA
+>EF589040.1  HIV-1 isolate 02KZYUZ300413 from Kazakhstan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
+------GCGAGAGCGTCGGTATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGG
+TTAAGGCCAGGGGGAAAGAAAAAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAG
+CTGGAAAGATTCGCGCTTAACCCTAGCCTTTTAGAAACATCAGAAGGATGTCAGCAAATA
+CTGGAACAGTTACAACCAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATATAAT
+ACAGTAGCAACCCTCTATTGTGTACATCAACGGATAGAAATAAAAGACACCAAGGAAGCT
+TTAGATAAAATAGAGGAAATACAAAATAAGAGCAAGCAAAAGACCCAACAGGCAGCAACT
+GGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGG
+CAAATGACACACCAGTCCATGTCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAA
+GAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAGGGAGCCACC
+CCACAAGATTTAAACATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATG
+TTGAAAGATACCATCAATGAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCA
+GGGCCTTTTCCACCAGGGCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT
+AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAACCCACCTATTCCAGTGGGAGAC
+ATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTACGAATGTATAGCCCTGTT
+AGCATTTTAGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTC
+TTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGATGTAAAGAACTGGATGACAGAAACC
+CTGCTGGTCCAAAATGCAAATCCAGATTGTAAAACTATTTTAAGAGCATTGGGATCAGGG
+GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCA
+AGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAAT---GCAAACATAATGATGCAGAAA
+AGTAATTTTAGGGGCACAAAAAGAATT---AAGTGTTTCAACTGTGGCAAAGAAGGACAC
+CTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGC
+CATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAGAATTTGGCCTTCC
+AGCAAAGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAACCATCAGCCCCACCAGCA
+GAAAACTTT---GGGATGAGGGAAGAGATAACCCCCTCCCTGAAACAGGAACAGAAAGAC
+AGGGAACAACGTCCTCCTTCATCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAG
+TAA
+>JF320157.1  HIV-1 isolate 502-1478_wg5 from USA gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
+ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTGGATAAATGGGAAAAAATTAGG
+TTAAGGCCAGGGGGAAAGAAAAGGTATAAATTAAAACATATAGTATGGGCAAGCAGGGAG
+CTAGAACGATTCGCAGTCAATCCTGGCCTGTTAGAAACAGCAGAAGGCTGCAGACAAATA
+CTGGGACAGTTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAAT
+ACAGTAGCAACTCTCTATTGTGTTCATCAATACATAGAGGTAAAGGACACCAAGGAAGCT
+TTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAGAGGGCACAGGCAGCAGCAGCT
+GACACAGGAAACAACAGCAATGTCAGCCAAAATTACCCCATAGTGCAGAATTCTCAGGGG
+CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTGATAGAA
+GAGAAAGCTTTCAGCCCAGAAGTAATACCCATGTTTACAGCCTTATCAGAAGGAGCCACC
+CCACACGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATG
+TTAAAAGAAACCATCAATGATGAAGCCGCAGAATGGGATAGATTGCATCCAGTGCATGCA
+GGACCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACT
+AGTACCCTTCAGGAACAAATAGCATGGACAACAAATAACCCACCTATCCCAGTAGGAGAA
+ATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACC
+AGCATTCTGGACATAAAACAAGGACCAAAGGAGCCCTTTAGAGATTATGTAGACCGGTTC
+TATAAAACTCTAAGAGCCGAGCAAGCAACACAGGAGGTAAAAAATTGGATGACAGAAACC
+TTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACTATCTTAAGAGCATTGGGACCAGCA
+GCTACACTAGAAGAAATGATGACAGCATGTCAAGGAGTAGGAGGACCCGGCCATAAGGCA
+AGAGTTTTGGCTGAGGCAATGAGTCAAGTGACAAATGCAAATGCCATAATGATACAGAGA
+GGCAATTTTAAGGGCCAAAGAAAGACTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCAC
+ATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGACAGGAAGGA
+CACCAAATGAAGGATTGTAATGAGAGACAGGCTAATTTTTTA------------------
+---------------GGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCTCCAGAA
+GAGAGCCTCAGGTTTGGGGAAGGGACAACACCTCCCTCTCAGAAGCAGGAGCCGATAGAC
+AAGGAGATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAA
+TAA
+>AY532635.1  HIV-1 isolate 02CM-DJO0131 from Cameroon, complete genome
+ATGGGTGCGAGAGCGTCAGTGTTAACAGGGGGAAAATTAGATCAATGGGAAGCAATTTAT
+TTGAGACCAGGGGGAAAGAAAAAATACAGAATGAAACATTTAGTATGGGCAAGCAGGGAG
+CTGGAAAGATTCGCTTGTAACCCAGGTCTCATGGACACAGCGAGCGGCTGTGCCCAGTTA
+CTAAACCAATTAGAACCAGCTCTCGCAACAGGGTCAGAAGGACTGCGCTCCTTATATAAC
+GCCCTAGCAGTTCTTTATTGTGTCCATAGTAACATACAGGTACACAATACACAAGAGGCG
+TTGGACAAGATAAAAAAGGAACGGCACAAGTCCGAGCCAAAAAACCCAGAAGCAGGGGCA
+GCGGCAGCAGCTGATAACAATATCAGTAGGAATTATCCTCTAGTCCAGAATGCTCAAGGA
+CAAATGATACATCAGCCGCTGACACCCAGAACTTTAAATGCTTGGGTAAAAGTGATAGAG
+GAGAAGGCCTTTAATCCAGAAGTAATACCAATGTTTATGGCCTTGTCAGAAGGGGCAACA
+CCCGCAGATCTAAATACTATGTTAAATACAGTAGGAGGACATCAGGCAGCTATGCAGATG
+CTAAAGGAAGTCATCAATGAGGAAGCAGCAGAATGGGACAGGACGCATCCARTCCCTGYG
+GGACCATTACCCCCAGGACAACTGAGAGAACCTAGAGGAAGTGATATAGCAGGGACAACT
+AGTACTCTGMTGGAACAGGTGACCTGGATGACTTCTAATCCTCCTGTTCCAGTAGGAGAA
+ATCTATAAAAAATGGATAGTTCTGGGGTTAAATAGAATTGTGAGAATGTATAGTCCTGTC
+AGCATTCTAGAGATCAAACAAGGACCAAAAGAACCCTTTAGAGATTATGTAGACAGGTTC
+TACAAAACTTTAAGAGCAGAGCAGGCATCACAGGATGTAAAGAATTGGATGACAGAAACA
+CTCTTAGTACAAAATGCAAATCCAGATTGTAAACAGATACTAAAAGCATTAGGGCCAGCA
+GCTACCTTAGAAGAAATGATGACGGCCTGTCAGGGAGTGGGGGGACCAGCGCATAAGGCA
+AGAGTGCTAGCAGAGGCTATGTCACAGGTACAGACAGCAACTAGTGTCTTTGCACAAGGG
+AGAAACTTTAAAGGCATAAGGAGAACCATTAGATGTTTCAATTGTGGCAAAGAGGGCCAT
+TTGGCAAGAAACTGTAAGGCCCCTAGAAGAGGGGGCTGTTGGAAATGTGGGCAAGAAGGA
+CATCAAATGAAAGATTGTAATGAAAGACAGGCTAATTTTTTAGGAAAGGGCTGGTCTCCC
+TTCAAAGGGAGACCAGGCAACTTCCCCCAGACAAGGAAAGAGCCCACAGCCCCGCCACTA
+GAGAATTATGGGTCTCAGGAGGAGAGCACACAGGGGAAGGAGAGGCAGGAGAACACAGAG
+AACTCTCTATACCCCTTAACTTCCCTCAGATCACTCTTTGGCAACGACCTGTCATCACAG
+TAA
+>AB253691.1  Human immunodeficiency virus 1 proviral DNA, complete genome, clone: pJPDR0492AE62
+ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATACATGGGAAAAAATTCGG
+TTACGGCCAGGGGGGAAGAAAAAATATAGGATGAAACATTTAGTATGGGCAAGCAGAGAG
+TTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATA
+CTAGAACAGTTACAGACAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATTTAAT
+ACAATAGCAACCCTCTGGTGCGTGCACCAAAGGATAGAGGTAAGGGACACCAAGGAAGCT
+TTAGATAAAATAGAGGAAGTACAAAATAAGAGCCAGCAAAAGACACAGCAGGGAGCAGCT
+GGCACAGGAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGG
+CAAATGGTACATCAGCCTTTATCACCTAGAACCTTGAACGCATGGGTGAAAGTAGTAGAA
+GAAAAGGGTTTTAACCCAGAAGTAATACCCATGTTCACAGCATTATCAGAGGGAGCCACC
+CCACAAGATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATG
+TTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCA
+GGGCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGATCTACT
+AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAATCCTCCTATCCCAGTGGGAGAC
+ATCTATAAAAGGTGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTT
+AGCATTTTGGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTC
+TATAAAACTCTCAGAGCGGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACC
+TTGCTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGA
+GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTGGCCATAAAGCA
+AGGGTTTTGGCTGAGGCAATGAGCCAAGTACAA---CATGCAAAGATAATGATGCAGAGA
+GGCAATTTTAAGGGCCAGAGAAGCATT---AAGTGCTTCAACTGTGGCAGAGAAGGACAC
+CTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
+CATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCC
+AACAAGGGAAGGCCAGGGAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCA
+GAAAGCTGG---GAGATGAGGGAGGAGACAACCTCCTTACTGAAGCAGGAGCAGAAAGAC
+AAGGAACATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTCACAG
+TAA
+>JN024567.1  HIV-1 isolate USPI38051EI7y05121pcWG2B6 from USA gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
+ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAAAATTCGG
+TTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAA
+CTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGATGGCTGTAGACAAATA
+CTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCTTTATATAAT
+ACAATAGCAACCCTCTATTGTGTACATCAAGGAATAGAGATAAAAGACACCAAGGAAGCT
+CTAGACAAAATAGAGGAAGAGCAGAACAAAAGTAAGAAAAAACAAGCAGCAGCAGCAGCT
+GACACAGGAAACAGGGGACAGGTCAGTCAAAATTTCCCTATAGTGCAGAACCTACAGGGG
+CAAATGGTACATCAACCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTGGAA
+GAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACC
+CCACAAGATTTAAACACCATGTTAAACACGGTGGGGGGACATCAAGCAGCCATGCAAATG
+TTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCA
+GGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACT
+AGTAACCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAA
+ATCTATAAAAGATGGATAATCCTGGGATTAAACAAAATAGTAAGAATGTATAGCCCTACC
+AGCATTCTGGACATAAAGCAAGGACCAAAGGAACCCTTTAGAGATTATGTAGACCGGTTT
+TATAAAACTCTGAGAGCCGAACAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACC
+TTGTTGGTCCAGAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTAGGGCCAGGA
+GCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCTAGTCATAAAGCA
+AGAGTTTTGGCAGAAGCAATGAGCCAAGTA---AATTCAGCTACCGTAATGATGCAGAGG
+GGCAATATTAGGAACTAAAGAAAGGCTGCCAAGTGTTTCAATTGTGGCAAAGAAGGGCAC
+ATAGCCAGAAATTGCAGAGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
+CACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCC
+CACAAGGGAAGGCCAGGAAATTTTCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAA
+GAGAGCTTCAGGTTTGGGGAGGGGACAACAACCCCCCCTCAGAAGCAGGAGCAGATAGAC
+AAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCGTCGTCACAA
+TAA