comparison vsearch_macros.xml @ 4:576963db5f1b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 89e3a62dd6cbc8bcec84d08c1710bfb4e7f5938f

3:4258854759ba

<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="1.9.7">vsearch</requirement>
        </requirements>
    </xml>
    <token name="@VERSION@">1.9.7</token>

    <xml name="version_command">

            <when value="no" />
        </conditional>
    </xml>

    <xml name="general_output">
        <param name="outputs" type="select" multiple="True" label="Select output files" help="">
            <option value="--alnout">Human-readable alignment output</option>
            <option value="--blast6out" selected="True">Blast-like tab-separated output</option>
            <option value="--fastapairs">Write query/target pairs of sequences</option>
            <yield/>
            <validator type="no_options" message="Please select at least one output." />
        </param>
    </xml>

    <token name="@EXTERNAL_DOCUMENTATION@">
<![CDATA[

For details about this tool, please refer to the `github account <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/raw/master/doc/vsearch_manual.pdf>`_.

]]>
    </token>
    <token name="@USERFIELDS_HELP@">
**Available fields in user defined tabular output**

4:576963db5f1b

<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@VERSION@">vsearch</requirement>
        </requirements>
    </xml>
    <token name="@VERSION@">1.9.7</token>

    <xml name="version_command">

            <when value="no" />
        </conditional>
    </xml>

    <xml name="general_output">
        <param name="outputs" type="select" multiple="True" optional="false" label="Select output files" help="">
            <option value="--alnout">Human-readable alignment output</option>
            <option value="--blast6out" selected="True">Blast-like tab-separated output</option>
            <option value="--fastapairs">Write query/target pairs of sequences</option>
            <yield/>
        </param>
    </xml>

    <token name="@EXTERNAL_DOCUMENTATION@">
<![CDATA[

For details about this tool, please refer to the `GitHub repository <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/releases/download/v1.9.7/vsearch_manual.pdf>`_.

]]>
    </token>
    <token name="@USERFIELDS_HELP@">
**Available fields in user defined tabular output**