Mercurial > repos > iuc > vsearch
diff dereplication.xml @ 2:f29e21388219 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 64c1c4c664c6a131d897f574dc849f5668fa97d2
author | iuc |
---|---|
date | Thu, 17 Dec 2015 12:53:39 -0500 |
parents | 8c4e2933a17a |
children | 4258854759ba |
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--- a/dereplication.xml Wed Aug 26 13:34:22 2015 -0400 +++ b/dereplication.xml Thu Dec 17 12:53:39 2015 -0500 @@ -1,4 +1,4 @@ -<tool id="vsearch_dereplication" name="VSearch dereplication" version="@VERSION@.1"> +<tool id="vsearch_dereplication" name="VSearch dereplication" version="@VERSION@.2"> <description></description> <macros> <import>vsearch_macros.xml</import> @@ -10,22 +10,22 @@ <![CDATA[ vsearch @GENERAL@ - --derep_fulllength $infile - #if $maxuniquesize: - --maxuniquesize $maxuniquesize + --derep_fulllength "$infile" + #if str($maxuniquesize): + --maxuniquesize "$maxuniquesize" #end if - #if $minuniquesize: - --minuniquesize $minuniquesize + #if str($minuniquesize): + --minuniquesize "$minuniquesize" #end if - --output $outfile + --output "$outfile" $sizein - $sizeout - --strand $strand - #if $topn: - --topn $topn + $sizeout + --strand "$strand" + #if str($topn): + --topn "$topn" #end if #if $uc: - --uc $uc_outfile + --uc "$uc_outfile" #end if ]]> </command> @@ -99,10 +99,6 @@ @EXTERNAL_DOCUMENTATION@ -------- - -@REFERENCES@ - ]]> </help>