comparison vsnp_add_zero_coverage.py @ 1:aed013f6b13b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp commit 94e69abb568077267eb8b15ef624624e2899a750"

0:0ad85e7db2fc

#!/usr/bin/env python

import argparse
import multiprocessing
import os
import pandas
import pysam
import queue
import re
import shutil
from Bio import SeqIO

INPUT_BAM_DIR = 'input_bam_dir'
INPUT_VCF_DIR = 'input_vcf_dir'
OUTPUT_VCF_DIR = 'output_vcf_dir'

1:aed013f6b13b

#!/usr/bin/env python

import argparse
import multiprocessing
import os
import queue
import re
import shutil

import pandas
import pysam
from Bio import SeqIO

INPUT_BAM_DIR = 'input_bam_dir'
INPUT_VCF_DIR = 'input_vcf_dir'
OUTPUT_VCF_DIR = 'output_vcf_dir'