Mercurial > repos > iyad > package_blast_2_2_26

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Initial commit - adapted tool_dependencies.xml from Blast Plus 2.2.26 repository
author iyad
date Mon, 10 Nov 2014 15:11:48 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 72 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 10 15:11:48 2014 -0500
@@ -0,0 +1,72 @@
+<?xml version='1.0' encoding='utf-8'?>
+<tool_dependency>
+	<package name="blast" version="2.2.26">
+		<install version="1.0">
+			<actions_group>
+				<!-- Download the binaries for BLAST compatible with 64-bit OSX. -->
+				<actions os="darwin" architecture="x86_64">
+					<action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-universal-macosx.tar.gz</action>
+					<action type="move_directory_files">
+						<source_directory>bin</source_directory>
+						<destination_directory>$INSTALL_DIR</destination_directory>
+					</action>
+				</actions>
+				<!-- Download the binaries for BLAST compatible with 32-bit OSX. -->
+				<actions os="darwin" architecture="i386">
+					<action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-universal-macosx.tar.gz</action>
+					<action type="move_directory_files">
+						<source_directory>bin</source_directory>
+						<destination_directory>$INSTALL_DIR</destination_directory>
+					</action>
+				</actions>
+				<!-- Download the binaries for BLAST compatible with 64-bit Linux. -->
+				<actions os="linux" architecture="x86_64">
+					<action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-x64-linux.tar.gz</action>
+					<action type="move_directory_files">
+						<source_directory>bin</source_directory>
+						<destination_directory>$INSTALL_DIR</destination_directory>
+					</action>
+				</actions>
+				<!-- Download the binaries for BLAST compatible with 32-bit Linux (i386). -->
+				<actions os="linux" architecture="i386">
+					<action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-ia32-linux.tar.gz</action>
+					<action type="move_directory_files">
+						<source_directory>bin</source_directory>
+						<destination_directory>$INSTALL_DIR</destination_directory>
+					</action>
+				</actions>
+				<!-- Download the binaries for BLAST compatible with 32-bit Linux (i686). -->
+				<actions os="linux" architecture="i686">
+					<action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-ia32-linux.tar.gz</action>
+					<action type="move_directory_files">
+						<source_directory>bin</source_directory>
+						<destination_directory>$INSTALL_DIR</destination_directory>
+					</action>
+				</actions>
+				<!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
+				<actions>
+					<action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-src.tar.gz</action>
+					<action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
+				</actions>
+				<!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
+					<action type="set_environment">
+						<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+					</action>
+				</actions_group>
+			</install>
+			<readme>
+*Authors &amp; Contacts*
+Iyad Kandalaft | Iyad.Kandalaft@Agr.gc.ca  | Agriculture and Agri-Foods Canada
+Kevin Chen | Agriculture and Agri-Foods Canada
+
+*Repository Description*
+The package_blast_2_2_26 repository downloads and builds the legacy NCBI Blast source code v2.2.26 on various operating systems and architectures.
+The repository is a modification of the NCBI Blast Plus package.
+
+These links provide information for building the legacy NCBI Blast package in most environments.
+
+System requirements
+http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
+			</readme>
+		</package>
+	</tool_dependency>