Mercurial > repos > izsam > phylogeny_converter
diff convert.xml @ 0:37392af48c37 draft default tip
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| author | izsam |
|---|---|
| date | Thu, 19 Mar 2015 11:46:50 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convert.xml Thu Mar 19 11:46:50 2015 -0400 @@ -0,0 +1,47 @@ +<tool id="phylogeny_converter" name="phylogeny_converter"> + <description></description> + <command interpreter="python"> + converter.py $input $output $filetype.inouttype $filetype.type + </command> + <inputs> + <conditional name="filetype"> + <param name="type" type="select" label="is this a multi-sequence file?"> + <option value="multi">Multi sequence</option> + <option value="single">Single sequence</option> + </param> + <when value="single"> + <param name="input" type="data" label="Original sigle sequence file"/> + <param name="inouttype" type="select" label="conversion"> + <option value="f-g">Fasta to GenBank</option> + <option value="g-f">GenBank to Fasta</option> + </param> + </when> + <when value="multi"> + <param name="input" type="data" label="Original multi sequence file" help="Please note that Phylip and nexus limit sequence names to a maximum of 10 characters"/> + <param name="inouttype" type="select" label="conversion"> + <option value="f-g">Fasta to GenBank</option> + <option value="g-f">GenBank to Fasta</option> + <option value="f-p">Fasta to Phylip</option> + <option value="f-n">Fasta to Nexus</option> + <option value="p-f">Phylip to Fasta</option> + <option value="p-n">Phylip to Nexus</option> + <option value="n-p">Nexus to Phylip</option> + <option value="n-f">Nexus to Fasta</option> + </param> + </when> + </conditional> + </inputs> + <outputs> + <data name="output" format="tabular"/> + </outputs> + <help> + +What it does + +This tool converts different file formats to allow the data-exchange from different philogeny tools. + +Developed by +Iolanda Mangone + + </help> +</tool>