diff bedGraphToBigWig/bedGraphToBigWig.xml @ 0:dfb484045b7e draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bedGraphToBigWig/bedGraphToBigWig.xml	Mon Apr 04 14:06:57 2022 +0000
@@ -0,0 +1,24 @@
+<tool id="bedGraphToBigWig" name="Convert a bed file to a BigWig" version="1.0">
+    <description>Converting your ribosome profile bed file to a bigwig which is used for track creation on GWIPS-Viz</description>
+    <command><![CDATA[
+        $__tool_directory__/bedGraphToBigWig ${input1} ${input2} ${output1}
+    ]]></command>
+    <inputs>
+        <param name="input1" type="data" format="bed" label="Bed File" />
+        <param name="input2" type="data" format="tabular" label="Chromosome Sizes" />
+    </inputs>
+    <outputs>
+       <data name="output1" format="bigwig"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="test.bed" ftype="bed" />
+            <param name="input2" value="test.chrom.sizes" ftype="tabular" />
+            <output name="output1" file="test.bw" ftype="bigwig" lines_diff="4" />
+        </test>
+    </tests>
+    <help>
+
+    </help>
+    <citations/>
+</tool>