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comparison bowtie_rRNA_removal_wrapper/bowtie_rRNA_removal_wrapper.xml @ 9:82854aad329b draft

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author triasteran
date Wed, 23 Mar 2022 17:48:46 +0000
parents 8ae1d397d66d
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8:8ae1d397d66d 9:82854aad329b
1 <tool id="bowtie_rRNA_removal_wrapper" name="Remove rRNA using Bowtie" version="1.4.0b"> 1 <tool id="bowtie_rRNA_removal_wrapper" name="Remove rRNA using Bowtie" version="1.4.0c">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2.0">bowtie</requirement> 4 <requirement type="package" version="1.2.0">bowtie</requirement>
5 </requirements> 5 </requirements>
6 <version_command>bowtie --version</version_command> 6 <version_command>bowtie --version</version_command>
7 <command> 7 <command>
8 python '$__tool_directory__/bowtie_rRNA_removal_wrapper.py' 8 python3 '$__tool_directory__/bowtie_rRNA_removal_wrapper.py'
9 ## Set number of threads 9 ## Set number of threads
10 --threads="\${GALAXY_SLOTS:-4}" 10 --threads="\${GALAXY_SLOTS:-4}"
11 ## Outputs 11 ## Outputs
12 --output="${output}" 12 --output="${output}"
13 #if str( $singlePaired.sPaired ) == "single" 13 #if str( $singlePaired.sPaired ) == "single"