Mercurial > repos > jackcurragh > ribogalaxy_bowtie_rrna

diff bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py @ 28:44e61af3637d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jackcurragh
date Tue, 12 Jul 2022 13:31:22 +0000
parents 7b142d90bb06
children 104d6756bcbc
line wrap: on
line diff
--- a/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py	Tue Jul 12 13:22:56 2022 +0000
+++ b/bowtie_rRNA_removal_wrapper/bowtie_rRNA_tRNA_removal_wrapper.py	Tue Jul 12 13:31:22 2022 +0000
@@ -394,7 +394,7 @@
                 keepends = ''
             if options.output_unmapped_reads_l or options.output_unmapped_reads_r or options.output_unmapped_reads:
                 aligning_cmds = '-q %s %s -p %s %s %s %s %s %s %s %s %s %s %s %s %s ' \
-                            '%s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s ' % \
+                            '%s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s %s --suppress' % \
                             ( maxInsert, mateOrient, options.threads, suppressHeader,
                               colorspace, skip, alignLimit, trimH, trimL, maxMismatches,
                               mismatchSeed, mismatchQual, seedLen, rounding, minInsert,