Mercurial > repos > jackcurragh > ribogalaxy_bowtie_rrna
diff bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample @ 5:b300c15426f5 draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Mon, 21 Mar 2022 12:53:51 +0000 |
| parents | 9424721e6296 |
| children | d3c89fb66c4d |
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--- a/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample Tue Mar 15 10:27:46 2022 +0000 +++ b/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample Mon Mar 21 12:53:51 2022 +0000 @@ -1,37 +1,1 @@ -#This is a sample file distributed with Galaxy that enables tools -#to use a directory of Bowtie indexed sequences data files. You will -#need to create these data files and then create a bowtie_indices.loc -#file similar to this one (store it in this directory) that points to -#the directories in which those files are stored. The bowtie_indices.loc -#file has this format (longer white space characters are TAB characters): -# -#<unique_build_id> <dbkey> <display_name> <file_base_path> -# -#So, for example, if you had hg18 indexed stored in -#/depot/data2/galaxy/bowtie/hg18/, -#then the bowtie_indices.loc entry would look like this: -# -#hg18 hg18 hg18 /depot/data2/galaxy/bowtie/hg18/hg18 -# -#and your /depot/data2/galaxy/bowtie/hg18/ directory -#would contain hg18.*.ebwt files: -# -#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.1.ebwt -#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg18.2.ebwt -#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 hg18.3.ebwt -#...etc... -# -#Your bowtie_indices.loc file should include an entry per line for each -#index set you have stored. The "file" in the path does not actually -#exist, but it is the prefix for the actual index files. For example: -# -#hg18canon hg18 hg18 Canonical /depot/data2/galaxy/bowtie/hg18/hg18canon -#hg18full hg18 hg18 Full /depot/data2/galaxy/bowtie/hg18/hg18full -#/orig/path/hg19 hg19 hg19 /depot/data2/galaxy/bowtie/hg19/hg19 -#...etc... -# -#Note that for backwards compatibility with workflows, the unique ID of -#an entry must be the path that was in the original loc file, because that -#is the value stored in the workflow for that parameter. That is why the -#hg19 entry above looks odd. New genomes can be better-looking. -# +yeast_rRNA yeast_test yeast_rRNA ${__HERE__}/indexes/yeast_rRNA \ No newline at end of file