# HG changeset patch
# User jackcurragh
# Date 1649163416 0
# Node ID 1a0032ffccc8f26c60f00bcaea8f367f8f49de1b
# Parent  6133b452e1af23cc454fa86c343d51ce6d7d83a2
Uploaded

diff -r 6133b452e1af -r 1a0032ffccc8 bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc
--- a/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc	Tue Apr 05 12:54:32 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-sacCer9rRNA	sacCer9	Saccharomyces cerevisiae rRNA	/data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA
-sacCer9tRNA	sacCer9	Saccharomyces cerevisiae tRNA	/data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_tRNA
-sacCer9rRNAtRNA	sacCer9	Saccharomyces cerevisiae rRNA and tRNA	/data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA_tRNA
-
-hg38rRNA	hg38	Homo sapiens rRNA	/data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA
-hg38tRNA	hg38	Homo sapiens tRNA	/data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_tRNA
-hg38rRNAtRNA	hg38	Homo sapiens rRNA and tRNA	/data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA_tRNA
-
-e_colirRNA	e_coli	Escherichia coli rRNA	/data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA
-e_colitRNA	e_coli	Escherichia coli tRNA	/data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_tRNA
-e_colirRNAtRNA	e_coli	Escherichia coli rRNA and tRNA	/data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA_tRNA
-
-dm6rRNA	dm6	Drosophila melanogater rRNA	/data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA
-dm6tRNA	dm6	Drosophila melanogater tRNA	/data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_tRNA
-dm6rRNAtRNA	dm6	Drosophila melanogater rRNA and tRNA	/data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA_tRNA
-
-m28rRNA	m28	Mus musculus rRNA	/data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA
-m28tRNA	m28	Mus musculus tRNA	/data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_tRNA
-m28rRNAtRNA	m28	Mus musculus rRNA and tRNA	/data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA_tRNA
-
-araThalrRNA	araThal	Arabidopsis thaliana (TAIR10) rRNA	/data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA
-araThaltRNA	araThal	Arabidopsis thaliana (TAIR10) tRNA	/data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_tRNA
-araThalrRNAtRNA	araThal	Arabidopsis thaliana (TAIR10) rRNA and tRNA	/data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA_tRNA
diff -r 6133b452e1af -r 1a0032ffccc8 bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample	Tue Apr 05 12:56:56 2022 +0000
@@ -0,0 +1,23 @@
+sacCer9rRNA	sacCer9	Saccharomyces cerevisiae rRNA	/data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA
+sacCer9tRNA	sacCer9	Saccharomyces cerevisiae tRNA	/data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_tRNA
+sacCer9rRNAtRNA	sacCer9	Saccharomyces cerevisiae rRNA and tRNA	/data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA_tRNA
+
+hg38rRNA	hg38	Homo sapiens rRNA	/data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA
+hg38tRNA	hg38	Homo sapiens tRNA	/data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_tRNA
+hg38rRNAtRNA	hg38	Homo sapiens rRNA and tRNA	/data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA_tRNA
+
+e_colirRNA	e_coli	Escherichia coli rRNA	/data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA
+e_colitRNA	e_coli	Escherichia coli tRNA	/data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_tRNA
+e_colirRNAtRNA	e_coli	Escherichia coli rRNA and tRNA	/data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA_tRNA
+
+dm6rRNA	dm6	Drosophila melanogater rRNA	/data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA
+dm6tRNA	dm6	Drosophila melanogater tRNA	/data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_tRNA
+dm6rRNAtRNA	dm6	Drosophila melanogater rRNA and tRNA	/data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA_tRNA
+
+m28rRNA	m28	Mus musculus rRNA	/data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA
+m28tRNA	m28	Mus musculus tRNA	/data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_tRNA
+m28rRNAtRNA	m28	Mus musculus rRNA and tRNA	/data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA_tRNA
+
+araThalrRNA	araThal	Arabidopsis thaliana (TAIR10) rRNA	/data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA
+araThaltRNA	araThal	Arabidopsis thaliana (TAIR10) tRNA	/data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_tRNA
+araThalrRNAtRNA	araThal	Arabidopsis thaliana (TAIR10) rRNA and tRNA	/data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA_tRNA