# HG changeset patch
# User triasteran
# Date 1648034873 0
# Node ID d3c89fb66c4d4b02381cb323027fe59267250630
# Parent  3ccba3a4cf447fc171dbed76db78f3d8d9d281c3
Uploaded

diff -r 3ccba3a4cf44 -r d3c89fb66c4d bowtie_rRNA_removal_wrapper/bowtie_rRNA_removal_wrapper.xml
--- a/bowtie_rRNA_removal_wrapper/bowtie_rRNA_removal_wrapper.xml	Mon Mar 21 12:55:42 2022 +0000
+++ b/bowtie_rRNA_removal_wrapper/bowtie_rRNA_removal_wrapper.xml	Wed Mar 23 11:27:53 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="bowtie_rRNA_removal_wrapper" name="Remove rRNA using Bowtie" version="1.4.0">
+<tool id="bowtie_rRNA_removal_wrapper" name="Remove rRNA using Bowtie" version="1.4.0a">
   <description></description>
   <requirements>
     <requirement type="package" version="1.2.0">bowtie</requirement>
diff -r 3ccba3a4cf44 -r d3c89fb66c4d bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample
--- a/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample	Mon Mar 21 12:55:42 2022 +0000
+++ b/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample	Wed Mar 23 11:27:53 2022 +0000
@@ -1,1 +1,1 @@
-yeast_rRNA  yeast_test  yeast_rRNA  ${__HERE__}/indexes/yeast_rRNA
\ No newline at end of file
+sacCer3_rRNA  sacCer3_rRNA  sacCer3_rRNA  /home/alla/indices/sacCer3_rRNA_bowtie/yeast_rRNA
\ No newline at end of file
diff -r 3ccba3a4cf44 -r d3c89fb66c4d bowtie_rRNA_removal_wrapper/tool_data_table_conf.xml.sample
--- a/bowtie_rRNA_removal_wrapper/tool_data_table_conf.xml.sample	Mon Mar 21 12:55:42 2022 +0000
+++ b/bowtie_rRNA_removal_wrapper/tool_data_table_conf.xml.sample	Wed Mar 23 11:27:53 2022 +0000
@@ -3,6 +3,6 @@
     <!-- Locations of indexes in the Bowtie mapper format -->
     <table name="bowtie_indexes" comment_char="#">
         <columns>value, dbkey, name, path</columns>
-        <file path="${__HERE__}/tool-data/bowtie_indices.loc.sample" />
+        <file path="tool-data/bowtie_indices.loc.sample" />
     </table>
 </tables>