comparison bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml @ 3:14deb381fa27 draft

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2:cd79614871c2

<tool id="bowtie_transcriptomic_wrapper" name="Align to transcriptome using Bowtie" version="1.3.0ind">
  <description></description>
  <requirements>
    <requirement type="package" version="1.2.0">bowtie</requirement>
  </requirements>
  <version_command>bowtie --version</version_command>

        <option value="indexed">Use a built-in index</option>
        <option value="history">Use one from the history</option>
      </param>
      <when value="indexed">
        <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
          <options from_data_table="bowtie_indexes_transcriptome">
            <filter type="sort_by" column="2" />
            <validator type="no_options" message="No indexes are available" />
          </options>
        </param>
      </when>

3:14deb381fa27

<tool id="bowtie_transcriptomic_wrapper" name="Align to transcriptome using Bowtie" version="1.2.0">
  <description></description>
  <requirements>
    <requirement type="package" version="1.2.0">bowtie</requirement>
  </requirements>
  <version_command>bowtie --version</version_command>

        <option value="indexed">Use a built-in index</option>
        <option value="history">Use one from the history</option>
      </param>
      <when value="indexed">
        <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
          <options from_data_table="bowtie_indexes">
            <filter type="sort_by" column="2" />
            <validator type="no_options" message="No indexes are available" />
          </options>
        </param>
      </when>