Mercurial > repos > jackcurragh > ribogalaxy_bowtie_transcriptome
diff bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml @ 10:5f3a3790cc79 draft
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author | jackcurragh |
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date | Sat, 20 Aug 2022 11:38:55 +0000 |
parents | 15e6eb67d710 |
children | edc0f39f80db |
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--- a/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml Fri May 27 10:12:05 2022 +0000 +++ b/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml Sat Aug 20 11:38:55 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="bowtie_transcriptomic_wrapper" name="Bowtie Transcriptome Alignment" version="1.4.0"> +<tool id="bowtie_transcriptomic_wrapper" name="Bowtie Transcriptome Alignment" version="1.5.0"> <description>Align to Transcriptome using Bowtie</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement> @@ -222,7 +222,7 @@ <option value="paired">Paired-end</option> </param> <when value="single"> - <param name="sInput1" type="data" format="fastqsanger,fastqillumina,fastqsolexa" label="FASTQ file" help="Must have ASCII encoded quality scores"/> + <param name="sInput1" type="data" format="fastq,fastqsanger,fastqillumina,fastqsolexa" label="FASTQ file" help="Must have ASCII encoded quality scores"/> <conditional name="sParams"> <param name="sSettingsType" type="select" label="Bowtie settings to use" help="For most mapping needs use Commonly used settings. If you want full control use Full parameter list"> <option value="preSet">Commonly used</option> @@ -314,8 +314,8 @@ </conditional> <!-- sParams --> </when> <!-- single --> <when value="paired"> - <param name="pInput1" type="data" format="fastqsanger,fastqillumina,fastqsolexa" label="Forward FASTQ file" help="Must have ASCII encoded quality scores"/> - <param name="pInput2" type="data" format="fastqsanger,fastqillumina,fastqsolexa" label="Reverse FASTQ file" help="File format must match the Forward FASTQ file"> + <param name="pInput1" type="data" format="fastq,fastqsanger,fastqillumina,fastqsolexa" label="Forward FASTQ file" help="Must have ASCII encoded quality scores"/> + <param name="pInput2" type="data" format="fastq,fastqsanger,fastqillumina,fastqsolexa" label="Reverse FASTQ file" help="File format must match the Forward FASTQ file"> <options options_filter_attribute="ext" from_parameter="tool.app.datatypes_registry.datatypes_by_extension" transform_lines="obj.keys()"> <column name="name" index="0"/> <column name="value" index="0"/>