Mercurial > repos > jackcurragh > ribogalaxy_create_ribosome_profile
comparison create_ribosome_profile/create_ribosome_profile.xml @ 3:dfed3b7be399 draft
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| author | triasteran |
|---|---|
| date | Thu, 28 Apr 2022 12:08:08 +0000 |
| parents | f55468c622fa |
| children | 49e8fcbaaa72 |
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| 2:f55468c622fa | 3:dfed3b7be399 |
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| 1 <tool id="create_ribosome_profiles" name="Create Ribosome Profiles" version="1.0"> | 1 <tool id="create_ribosome_profiles" name="Create Ribosome Profiles" version="1.a"> |
| 2 <description>Produce a sorted bed file from a sorted BAM file with the option of introducing an offset to the A-Site of a ribosome protected fragment.</description> | 2 <description>Produce a sorted bed file from a sorted BAM file with the option of introducing an offset to the A-Site of a ribosome protected fragment.</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.79">biopython</requirement> | 4 <requirement type="package" version="1.73">biopython</requirement> |
| 5 <requirement type="package" version="0.19.0">pysam</requirement> | 5 <requirement type="package" version="0.19.0">pysam</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <command>python $__tool_directory__/bam_to_ribosome_profile.py ${input1} ${input2} ${input3} ${input4} ${output1}</command> | 7 <command>python $__tool_directory__/bam_to_ribosome_profile.py ${input1} ${input2} ${input3} ${input4} ${output1}</command> |
| 8 <inputs> | 8 <inputs> |
| 9 <param name="input1" type="data" format="bam" label="BAM file to process"/> | 9 <param name="input1" type="data" format="bam" label="BAM file to process"/> |