# HG changeset patch
# User jackcurragh
# Date 1652875653 0
# Node ID 8f8affaa5eb414184694ab3e000b0ed39bd50c9b
# Parent  4d69f7428243ce3381d1873dff3b4e77b00a9a5f
Uploaded

diff -r 4d69f7428243 -r 8f8affaa5eb4 create_ribosome_profile/create_ribosome_profile.xml
--- a/create_ribosome_profile/create_ribosome_profile.xml	Wed May 18 12:02:46 2022 +0000
+++ b/create_ribosome_profile/create_ribosome_profile.xml	Wed May 18 12:07:33 2022 +0000
@@ -12,9 +12,9 @@
             #end if
     </command>
     <inputs>
+        <param name="input1" type="data" format="bam" label="BAM file to process"/>
+        <param name="input2" type="integer" value="15" label="Offset to use" help="Use 15 for elongating ribosomes, 12 for initiating and 0 form RNA-seq reads"/>
         <conditional name="refGenomeSource">
-            <param name="input1" type="data" format="bam" label="BAM file to process"/>
-            <param name="input2" type="integer" value="15" label="Offset to use" help="Use 15 for elongating ribosomes, 12 for initiating and 0 form RNA-seq reads"/>
             <param name="genomeSource" type="select" label="Will you select a reference from your history or use a built-in FASTA?">
                 <option value="builtin">Use a built-in FASTA</option>
                 <option value="history">Use one from the history</option>