# HG changeset patch
# User jackcurragh
# Date 1653646354 0
# Node ID c2472a4400ef1aba0acd2ffa43156b186da26fa0
# Parent  e192ee3be074479190c27b372a425c975f72abb7
Uploaded

diff -r e192ee3be074 -r c2472a4400ef create_ribosome_profile/create_ribosome_profile.xml
--- a/create_ribosome_profile/create_ribosome_profile.xml	Wed May 18 12:59:18 2022 +0000
+++ b/create_ribosome_profile/create_ribosome_profile.xml	Fri May 27 10:12:34 2022 +0000
@@ -1,5 +1,5 @@
 <tool id="create_ribosome_profiles" name="Create Ribosome Profiles" version="1.1">
-    <description>Produce a sorted bed file of A-Site profiles of RPFs.</description>
+    <description>Produce a Sorted BED File of A-Site profiles of RPFs.</description>
     <requirements>
         <requirement type="package" version="1.79">biopython</requirement>
         <requirement type="package" version="0.19.0">pysam</requirement>
diff -r e192ee3be074 -r c2472a4400ef create_ribosome_profile/tool-data/builtin_fastas.loc.sample
--- a/create_ribosome_profile/tool-data/builtin_fastas.loc.sample	Wed May 18 12:59:18 2022 +0000
+++ b/create_ribosome_profile/tool-data/builtin_fastas.loc.sample	Fri May 27 10:12:34 2022 +0000
@@ -1,8 +1,8 @@
-mus_musculus_m28	m28	Mus musculus (m28) Genome	/data2/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28.fa
-drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Genome	/data2/indices/bowtie/genome/drosophila_melanogater_dm6/dm6.fa
-sacCer_9	sacCer9	Saccharomyces cerevisiae (v9) Genome	/data2/indices/bowtie/genome/sacCer_9/S288C_reference_sequence_R9-1-1_19990210.fsa
-sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Genome	/data2/indices/bowtie/genome/sacCer_3/S288C_reference_sequence_R3-1-1_19970730.fsa
-E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655) Genome	/data2/indices/bowtie/genome/E_coli_K12_MG1655/GCF_003368535.1_ASM336853v1_genomic.fna
-Arabidopsis	araThal	Arabidopsis thaliana (TAIR10) Genome	/data2/indices/bowtie/genome/Arabidopsis/GCF_000001735.4_TAIR10.1_genomic.fna
-homo_sapiens_hg19	hg19	Homo sapiens (hg19) Genome	/data2/indices/bowtie/genome/homo_sapiens_hg19/hg19.fa
-homo_sapiens_hg38	hg38	Homo sapiens (hg38) Genome	/data2/indices/bowtie/genome/homo_sapiens_hg38/hg38.fa
\ No newline at end of file
+mus_musculus_m28	m28	Mus musculus (m28) Genome	/mnt/data/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28.fa
+drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Genome	/mnt/data/indices/bowtie/genome/drosophila_melanogater_dm6/dm6.fa
+sacCer_9	sacCer9	Saccharomyces cerevisiae (v9) Genome	/mnt/data/indices/bowtie/genome/sacCer_9/S288C_reference_sequence_R9-1-1_19990210.fsa
+sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Genome	/mnt/data/indices/bowtie/genome/sacCer_3/S288C_reference_sequence_R3-1-1_19970730.fsa
+E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655) Genome	/mnt/data/indices/bowtie/genome/E_coli_K12_MG1655/GCF_003368535.1_ASM336853v1_genomic.fna
+Arabidopsis	araThal	Arabidopsis thaliana (TAIR10) Genome	/mnt/data/indices/bowtie/genome/Arabidopsis/GCF_000001735.4_TAIR10.1_genomic.fna
+homo_sapiens_hg19	hg19	Homo sapiens (hg19) Genome	/mnt/data/indices/bowtie/genome/homo_sapiens_hg19/hg19.fa
+homo_sapiens_hg38	hg38	Homo sapiens (hg38) Genome	/mnt/data/indices/bowtie/genome/homo_sapiens_hg38/hg38.fa
\ No newline at end of file