view generate_custom_track/generate_custom_track.xml @ 0:aedc582b98aa draft

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<tool id="generate-custom_track" name="Generate Custom Track" version="0.1">
    <description>Generates a Custom Track File for GWIPS-viz.</description>
    <command>
    python construct_custom_track.py $input1 $input2 "$input3" "$input4"
    </command>

    <inputs>
        <param name="input1" type="select" label="File Type">
            <option value="bigWig" selected="True">bigWig</option>
            <option value="bigBed">bigBed</option>
        </param>
        <param name="input2" type="text" label="URL of File (copy link from history)" />
        <param name="input3" type="text" label="Name of this sample" />
        <param name="input4" type="text" label="Description of this sample" />
        <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600"/>
    </inputs>
    <outputs>
       <data name="output1" format="text"/>
    </outputs>
    <tests>
        <test>
            <param name="input1" value="test.fasta" ftype="fasta" />
            <param name="input2" value="chr"/>
            <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" />
        </test>
    </tests>
    <help>
**What it does**

Generates a custom track file for GWIPS-viz. 

This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale.
    </help>
    <citations/>
</tool>