Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
comparison get_chrom_sizes/get_chrom_sizes.xml @ 23:ca6a237895f3 draft
Uploaded
author | jackcurragh |
---|---|
date | Wed, 18 May 2022 10:24:56 +0000 |
parents | 48d8d8217ac4 |
children | 3276016ac5b3 |
comparison
equal
deleted
inserted
replaced
22:48d8d8217ac4 | 23:ca6a237895f3 |
---|---|
1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2"> | 1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2"> |
2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> | 2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> |
3 <command> | 3 <command> |
4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} | 4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} |
5 #if $refGenomeSource.genomeSource == "builtin": | 5 #if $refGenomeSource.genomeSource == "builtin": |
6 ${refGenomeSource.input1_builtin.fields.path} ${output1} | 6 none ${refGenomeSource.input1_builtin.fields.path} ${output1} |
7 #else: | 7 #else: |
8 ${refGenomeSource.input1_file} ${output1} | 8 ${refGenomeSource.input1_file} none ${output1} |
9 #end if | 9 #end if |
10 | 10 |
11 | 11 |
12 </command> | 12 </command> |
13 <inputs> | 13 <inputs> |