Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
comparison get_chrom_sizes/get_chrom_sizes.xml @ 17:f87a4b64e6ef draft
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author | jackcurragh |
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date | Tue, 17 May 2022 13:57:39 +0000 |
parents | c7e2879bf357 |
children | 147706e55621 |
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16:ab7b5928faea | 17:f87a4b64e6ef |
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1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2"> | 1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2"> |
2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> | 2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> |
3 <command> | 3 <command> |
4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} ${output1} | 4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} "${output1}" |
5 #if $refGenomeSource.genomeSource == "builtin": | 5 #if $refGenomeSource.genomeSource == "builtin": |
6 ${refGenomeSource.input1_builtin.fields.path} | 6 ${refGenomeSource.input1_builtin.fields.path} |
7 #else: | 7 #else: |
8 ${refGenomeSource.input1_file} | 8 ${refGenomeSource.input1_file} |
9 #end if | 9 #end if |