diff get_chrom_sizes/get_chrom_sizes.xml @ 0:6d5d1b56c286 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Wed Mar 23 12:53:08 2022 +0000
@@ -0,0 +1,24 @@
+<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="1.0">
+    <description>order of storing aligned sequences</description>
+    <command><![CDATA[
+        cut -f1,2 '${input1}' > '${output1}' 
+    ]]></command>
+    <inputs>
+        <param name="input1" type="data" format="fai" label="FASTA FAI File" />
+    </inputs>
+    <outputs>
+       <data name="output1" format="tabular"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="test.fasta.fai" ftype="fai" />
+            <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" />
+        </test>
+    </tests>
+    <help>
+**What it does**
+
+creates a chromosome sizes file from a fai index
+    </help>
+    <citations/>
+</tool>