diff get_chrom_sizes/calculating_chrom.sizes.py @ 6:c96b29e00427 draft

Uploaded

--- a/get_chrom_sizes/calculating_chrom.sizes.py	Mon May 16 09:11:51 2022 +0000
+++ b/get_chrom_sizes/calculating_chrom.sizes.py	Tue May 17 13:02:31 2022 +0000
@@ -2,9 +2,11 @@
 # adapted from https://bioexpressblog.wordpress.com/2014/04/15/calculate-length-of-all-sequences-in-an-multi-fasta-file/
 from sys import argv
 # python calculating_chrom.sizes.py genome_input.fa output.chrom.sizes
-genome = str(argv[1])
-prefix = str(argv[2])
-output = str(argv[3])
+fasta_source = str(argv[1])
+genome = str(argv[2])
+builtin = str(argv[3])
+prefix = str(argv[4])
+output = str(argv[5])
 # genome = 'test-data/test.fasta'
 # output = "test-data/test_chrom.sizes"