Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
view get_chrom_sizes/get_chrom_sizes.xml @ 0:6d5d1b56c286 draft
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author | jackcurragh |
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date | Wed, 23 Mar 2022 12:53:08 +0000 |
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children | 27f3669eda60 |
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<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="1.0"> <description>order of storing aligned sequences</description> <command><![CDATA[ cut -f1,2 '${input1}' > '${output1}' ]]></command> <inputs> <param name="input1" type="data" format="fai" label="FASTA FAI File" /> </inputs> <outputs> <data name="output1" format="tabular"/> </outputs> <tests> <test> <param name="input1" value="test.fasta.fai" ftype="fai" /> <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" /> </test> </tests> <help> **What it does** creates a chromosome sizes file from a fai index </help> <citations/> </tool>