Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
view get_chrom_sizes/get_chrom_sizes.xml @ 2:a244b29ce89a draft
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author | jackcurragh |
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date | Wed, 20 Apr 2022 15:20:33 +0000 |
parents | 27f3669eda60 |
children | cfdf764b9226 |
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<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.0"> <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> <command> python $__tool_directory__/calculating_chrom.sizes.py ${input1} ${output1} </command> <inputs> <param name="input1" type="data" format="fasta" label="FASTA File" /> </inputs> <outputs> <data name="output1" format="tabular"/> </outputs> <tests> <test> <param name="input1" value="test.fasta" ftype="fasta" /> <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" /> </test> </tests> <help> **What it does** creates a chromosome sizes file from a fasta file </help> <citations/> </tool>