# HG changeset patch
# User jackcurragh
# Date 1652792998 0
# Node ID f1d2d3397870b7fa28de2ba30d947b134ff9c2d6
# Parent  c96b29e00427d7388ab38250971a942063a5f293
Uploaded

diff -r c96b29e00427 -r f1d2d3397870 get_chrom_sizes/get_chrom_sizes.xml
--- a/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:02:31 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:09:58 2022 +0000
@@ -1,7 +1,7 @@
 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2">
     <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description>
     <command>
-        python $__tool_directory__/calculating_chrom.sizes.py ${genomeSource} ${input1_file} ${input1_builtin} ${input2} ${output1}
+        python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${refGenomeSource.input1_file} ${refGenomeSource.input1_builtin} ${input2} ${output1}
     </command>
     <inputs>
         <conditional name="refGenomeSource">