Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
changeset 0:6d5d1b56c286 draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Wed, 23 Mar 2022 12:53:08 +0000 |
| parents | |
| children | 27f3669eda60 |
| files | get_chrom_sizes/get_chrom_sizes.xml get_chrom_sizes/test-data/test.fasta.fai get_chrom_sizes/test-data/test.fasta.sizes |
| diffstat | 3 files changed, 13408 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_chrom_sizes/get_chrom_sizes.xml Wed Mar 23 12:53:08 2022 +0000 @@ -0,0 +1,24 @@ +<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="1.0"> + <description>order of storing aligned sequences</description> + <command><![CDATA[ + cut -f1,2 '${input1}' > '${output1}' + ]]></command> + <inputs> + <param name="input1" type="data" format="fai" label="FASTA FAI File" /> + </inputs> + <outputs> + <data name="output1" format="tabular"/> + </outputs> + <tests> + <test> + <param name="input1" value="test.fasta.fai" ftype="fai" /> + <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" /> + </test> + </tests> + <help> +**What it does** + +creates a chromosome sizes file from a fai index + </help> + <citations/> +</tool>
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