Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
changeset 5:ec8651ac3d61 draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Mon, 16 May 2022 09:11:51 +0000 |
| parents | c6a297d05c8e |
| children | c96b29e00427 |
| files | get_chrom_sizes/get_chrom_sizes.xml get_chrom_sizes/tool-data/builtin_fastas.loc.sample |
| diffstat | 2 files changed, 9 insertions(+), 9 deletions(-) [+] |
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--- a/get_chrom_sizes/get_chrom_sizes.xml Fri May 13 09:17:14 2022 +0000 +++ b/get_chrom_sizes/get_chrom_sizes.xml Mon May 16 09:11:51 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.1"> +<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2"> <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> <command> python $__tool_directory__/calculating_chrom.sizes.py ${input1} ${input2} ${output1}
--- a/get_chrom_sizes/tool-data/builtin_fastas.loc.sample Fri May 13 09:17:14 2022 +0000 +++ b/get_chrom_sizes/tool-data/builtin_fastas.loc.sample Mon May 16 09:11:51 2022 +0000 @@ -1,8 +1,8 @@ -mus_musculus_m28 m28 Mus musculus (m28) Genome /data2/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28_genome.fa -drosophila_melanogaster_dm6 dm6 Drosophila melanogaster (dm6) Genome /data2/indices/bowtie/genome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_genome.fa -sacCer_9 sacCer9 Saccharomyces cerevisiae (v9) Genome /data2/indices/bowtie/genome/sacCer_9/sacCer_9_genome.fa -sarCer_3 sacCer3 Saccharomyces cerevisiae (v3) Genome /data2/indices/bowtie/genome/sacCer_3/sacCer_3_genome.fa -E_coli_K12_MG1655 e_coli Escherichia coli (K12 MG1655) Genome /data2/indices/bowtie/genome/E_coli_K12_MG1655/E_coli_K12_MG1655_genome.fa -Arabidopsis araThal Arabidopsis thaliana (TAIR10) Genome /data2/indices/bowtie/genome/Arabidopsis/Arabidopsis_genome.fa -homo_sapiens_hg19 hg19 Homo sapiens (hg19) Genome /data2/indices/bowtie/genome/homo_sapiens_hg19/homo_sapiens_hg19_genome.fa -homo_sapiens_hg38 hg38 Homo sapiens (hg38) Genome /data2/indices/bowtie/genome/homo_sapiens_hg38/homo_sapiens_hg38_genome.fa \ No newline at end of file +mus_musculus_m28 m28 Mus musculus (m28) Genome /data2/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28.fa.gz +drosophila_melanogaster_dm6 dm6 Drosophila melanogaster (dm6) Genome /data2/indices/bowtie/genome/drosophila_melanogater_dm6/dm6.fa.gz +sacCer_9 sacCer9 Saccharomyces cerevisiae (v9) Genome /data2/indices/bowtie/genome/sacCer_9/S288C_reference_sequence_R9-1-1_19990210.fsa +sarCer_3 sacCer3 Saccharomyces cerevisiae (v3) Genome /data2/indices/bowtie/genome/sacCer_3/S288C_reference_sequence_R3-1-1_19970730.fsa +E_coli_K12_MG1655 e_coli Escherichia coli (K12 MG1655) Genome /data2/indices/bowtie/genome/E_coli_K12_MG1655/GCF_003368535.1_ASM336853v1_genomic.fna.gz +Arabidopsis araThal Arabidopsis thaliana (TAIR10) Genome /data2/indices/bowtie/genome/Arabidopsis/GCF_000001735.4_TAIR10.1_genomic.fna.gz +homo_sapiens_hg19 hg19 Homo sapiens (hg19) Genome /data2/indices/bowtie/genome/homo_sapiens_hg19/hg19.fa.gz +homo_sapiens_hg38 hg38 Homo sapiens (hg38) Genome /data2/indices/bowtie/genome/homo_sapiens_hg38/hg38.fa.gz \ No newline at end of file