# HG changeset patch
# User jackcurragh
# Date 1654601635 0
# Node ID 8d47b5f57579d023cbea0c7cb07f001d012e24b7
# Parent  cdecd5f9a4d35f3b5de649304e7deca4e01bf7b3
Uploaded

diff -r cdecd5f9a4d3 -r 8d47b5f57579 trips_create_annotation/create_annotation_sqlite.py
--- a/trips_create_annotation/create_annotation_sqlite.py	Fri May 27 10:14:09 2022 +0000
+++ b/trips_create_annotation/create_annotation_sqlite.py	Tue Jun 07 11:33:55 2022 +0000
@@ -6,11 +6,9 @@
 import sys
 import re
 import sqlite3
-import subprocess
 
-from intervaltree import Interval, IntervalTree
+from intervaltree import IntervalTree
 import itertools
-from sqlitedict import SqliteDict
 import os
 
 organism = sys.argv[1]
diff -r cdecd5f9a4d3 -r 8d47b5f57579 trips_create_annotation/trips_create_annotation.xml
--- a/trips_create_annotation/trips_create_annotation.xml	Fri May 27 10:14:09 2022 +0000
+++ b/trips_create_annotation/trips_create_annotation.xml	Tue Jun 07 11:33:55 2022 +0000
@@ -1,8 +1,6 @@
 <tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.0">
     <description>Covert GFF3/GTF and transcriptome FASTA to custom annotation sqlite</description>
     <requirements>
-        <requirement type="package" version="0.19.0">pysam</requirement>
-        <requirement type="package" version="2.0.0">sqlitedict</requirement>
         <requirement type="package" version="3.37.1">sqlite</requirement>
         <requirement type="package" version="3.0.2">python-intervaltree</requirement>