Mercurial > repos > janislaw > fastqdump
changeset 1:4c5d50211c3d draft default tip
Uploaded
author | janislaw |
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date | Tue, 15 May 2012 10:40:31 -0400 |
parents | 6fe8288d4337 |
children | |
files | fastqdump.xml |
diffstat | 1 files changed, 18 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastqdump.xml Tue May 15 10:40:31 2012 -0400 @@ -0,0 +1,18 @@ +<tool id="fastqdump" name="fastq-dump"> + <description>convert SRA to FASTQ</description> + <command>/Users/xuebing/tools/sratoolkit.2.1.9-mac32/fastq-dump -A $input -M $minReadLen -Z > $out_file1 </command> + <inputs> + <param name="input" format="sra" type="data" label="Original file (SRA)"/> + <param name="minReadLen" size="10" type="integer" value="10" label="minimum read length to output"/> + </inputs> + <outputs> + <data format="fastq" name="out_file1" /> + </outputs> + <help> + +**What it does** + +This is a wrapper of the fastq-dump tool from sra-toolkit. See http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software + + </help> +</tool>