annotate NCBI Blast reference example_files/blastReq.css @ 120:2729c2326235

Fix for Rikilt issue 13 Hit e-value and identity% should be taken from the hsp with the highest bit score. Previously each of these values was calculated independently. Also use arrays for cover calculation instead of python lists and refactor the hit_info() code a bit.

#msgR .info {
background-color: #dfd;
padding: 4px;
border: solid 1px green;
color: green;
}

dl.summary dt {
float: left;
width: 8em;
clear:left;
margin: 0;
text-align: right;
padding-right: 1em;
color: #666;
}

dl.summary dd {
padding-left: 0.5em;
display: block;
margin-left: 7em !important;
margin: 0;
}
dl.summary dt, dl.summary dd {
margin-bottom: 0.5em;
}
a.help 
{
float:right;	
font-size: 110%;
}

dl.summary label {
display: inline;
}

dl.summary tr th label {
padding: 0;
margin-right:0;
}
table.options {
border: solid 1px #ccc;
border-right: solid 1px #ccc;
}

table.options td,
table.options td.frh {
font-size: 90%;
_font-size: 85%;
}

table.options label.rb {
border-right: solid 1px #ccc;
margin-right: 0.5em;
padding-right: 2.0em;
}

table.options tr td {
_font-size: 90%;
padding-left: 0.5em;
}

table.options {
/*border-collapse: collapse;*/
margin-left: 0;
padding-left: 0;
width: 62em;
}

table.options td label {
font-size: 90%;
}

table.options th label,
table.options td label {
margin-right: 0;
_position: relative;
_top: -0.1em;
}

table.options tr.hdr td,
table.options tr.hdr th {
padding: 2px;
border: solid 1px #ccc;
background-color: #ddd;
}

table.options td, table.options td.frh {
padding: 0.25em 0;
vertical-align: center;
}

table.options th {
padding-right: 1em;
text-align: right;
padding-left: 1em;
}

/*
*:focus{
background-color: white !important;
}
*/

table.options select,table.options input, #graphic input{
border: solid 1px #888;
padding: 1px;
}

select {
font-size: 90%;
}

select option {
padding-right: 0.5em;
}

input.cb, table.options input.cb {
border: none;
}

select {
margin-right:1em;
}

table.options tr {
background-color: #eee;
}

table.options tr.odd {
background-color: #e0e0e0;
}

table.options th {

background-color: white;
}

table.options tr.paramSet td
{
	border-top: solid 2px white;		
}




.resetAll 
{
font-weight: normal;
padding: 0.5em;
font-size: 90%;
margin-left:5em;
}

.button {
background-color: #ccc;
padding: 0.25em 0.25em;
color: black;
border: outset 3px #eee;
_border: outset 3px #eee;
font-size: 90%;
_padding:0;
font-weight: bold;
height:25px;
_height:22px;
}

.fbtn {
margin-bottom: 0.5em;
}

.note {
font-size: 80%;
color: green;
background-color: #ffc;
margin-left: 2em;
padding: 3px;
}
.instr {
   margin-left: 1em;
   color: #666;
font-size: 90%;
}
.smaller {
font-size: 90%;
font-weight: normal;
}

/* Results Page styles */

#ridRes 
{
	background-color: #FC9;	
	padding:5px 5px;	
}


span dd.hidden,dt.hidden,dd.hidden span
{
	display:none;
}

dl.query .query,
dl.title .title,
dl.entrez .entrez,  
dl.db .db  
{
	display:block;	
}


dl.entrez span.entrez
{
	display:inline;	
}

.hidden {
display: none;
}
.hide {
display: none;
}
.shown {
display: block;
}



table.megaBlast tr.psiBlast,
table.blastn tr.psiBlast,
table.blastx tr.psiBlast,
table.tblastn tr.psiBlast,
table.tblastx tr.psiBlast,
table.discoMegablast tr.psiBlast
{
display: none;
}


table.GlobalAln .xgl,
body.GlobalAln div.xgl,
body.GlobalAln dt.xgl,
body.GlobalAln dd.xgl,
body.GlobalAln span.xgl,
body.GlobalAln table.xgl
{
display: none;
}

.dispType
{
	/*background-color:White;
	border:solid 1px black;*/	
	border-top:solid 2px gray;
	border-left:solid 2px gray;	
	font-size:90%;	
	padding-left:2px;
	
}

.newwin {
border: none;
}

table.options .helplink
{
    font-weight:bold;
    position:absolute;
    right:0;
}

div#query label 
{
    display: inline;
    font-weight:bold;
    padding-right:1em;
}
#NEW_VIEW
{
    _margin-left:-2px;
}


table.blastp *.blastn,
table.psiBlast *.blastn,
table.phiBlast *.blastn,
table.blastx *.blastn,
table.tblastn *.blastn,
table.tblastx *.blastn
{
display: none;
}

#formatTable th.col1 {
width: 8em;
vertical-align: top;
}
/*
#formatTable .helplink span {
position: relative;
}
*/
#org
{
    margin-top:2em;      
}
#qorganism
{
    /*display:block;*/
}    
.fi
{
    position:relative;
}

a#organismHelp
{
    margin-top:-1.5em;
}

table.options tr.paramSet td.hd {
padding-right: 1em;
text-align: right;
padding-left: 1em;
background-color:White;
font-weight:bold;
border-top:none;
}
.oExcl
{
    margin-left:2px;
}