annotate NCBI Blast reference example_files/print.css @ 120:2729c2326235

Fix for Rikilt issue 13 Hit e-value and identity% should be taken from the hsp with the highest bit score. Previously each of these values was calculated independently. Also use arrays for cover calculation instead of python lists and refactor the hit_info() code a bit.

/*
LEGAL
=====
Copyright: Daemon Pty Limited 1995-2006, http://www.daemon.com.au & http://www.mollio.org/
License: Released Under the "Common Public License 1.0", http://www.opensource.org/licenses/cpl.php
Version: 010306
*/


body {font: 10pt arial,tahoma,verdana,sans-serif}
h1, h2, h3, h4, h5, h6 {margin: 1em 0 .2em;font-family: arial,tahoma,verdana,sans-serif}

* {float:none;position:static;background:#fff}
p {margin: 0 0 1em}
dt {font-weight:bold}

#nav, #search, #nav-secondary,  #poweredby {display:none}

/* =LINKS */
a {border:none}
a,a:link,a:link,a:link,a:hover {background:transparent;text-decoration:underline;cursor:pointer} 
a:link {color:#5291c4} 
a:visited {color:#666}
a:hover {color:#ff9900;border:none} 
a:active {color:#0066cc} 

.teaserBox {clear:both;margin: 0 0 1em}

.sponsors img {margin: .5em 0}

#footer {margin: 1em 0}

#jtitle {
border-bottom:2px solid black;
margin-top:0.25em;;
margin-left:-1.5em;;
margin-bottom: 2em;;
font-size: 110%;;
padding-bottoM:0.5em;;
}

/* TABLES */
table {font-size: 9pt;margin: 0 0 1em;border-collapse:collapse;}

	table th {border-bottom: 3px solid #000;vertical-align:top;padding: 1.5em 3px 3px;line-height:1.1;font: bold 145% arial;letter-spacing:0;text-align:left}
	.table1 th.time {border-bottom: none;font: bold 89% verdana;color:#ff9c00;vertical-align:top;padding: 3px}
	.table1 td {border: 1px solid #ddd;font-size: 9pt;padding: 3px;vertical-align:top}
	.table1 td a {display:block;width:auto;font-weight:bold}
	.table1 td a:link, .table1 td a:visited, .table1 td a:hover, .table1 td a:active {border:none;text-decoration:none}
	.table1 th.sub {background: #aaa}
	.table1 th.sub2 {background: #bbb;color:#000}
	.table1 td ul li {background: #fff}


#logolink img {
display: none;
}

#site-name {
font-size: 140%;
font-weight: bold;
padding: 3px;
text-align:center;
}

div.resHeader {
display:  none;
}

#content-wrap {
margin : 0 0.25in;
}

#blHeader pre, #query pre {
white-space: normal;
}

#blHeader pre p {
display: none; /* Get rid of pointer to BLAST FAQs */
}

#graphic input {
display: none;
}

#descs td { vertical-align: top; }
td.lim { white-space: normal; padding-bottom: 0.5em;}
#descs td { vertical-align: top; border-bottom: solid 1px #888; border-collapse: collapse; padding-top: 0;}

#descs a {
text-decoration: none;
color: black;
padding: 0;
margin: 0;
}

#descs th {
font-size: 110%;
}

#graphic table {
margin: 0;
}

input {
display: none;
}

#graphic h3 a {
border-bottom:2px solid black;
color:black;
display:block;
margin-bottom:2em;
margin-top:3em;
text-align:left;
text-decoration:none;
margin-left: -1.5em;
}


#graphic {page-break-after: always; }

td.l a { padding: 0; margin-right: 1em !important; font-weight:bold;}
#descs td {color: black;}

/* Get rid of stupid long headers */
#desctbl { margin-top: 1em; border-top: solid 1px #ccc; page-break-after: always;}
#desctbl table thead { display: none; margin-top: 1em;} 
#desctbl table tr td { width: 4em; } 
#desctbl table td.lim { width: 40em; }

#alignments { line-height: 0.9em; }
#alignments center b {
 display: block; z-index: 100; position: relative; 
}
#alignments center b font { color: black; display: block; text-align: left; font-size: 120%; padding: 0 0 3px; border-bottom: solid 2px #444; margin-left: -1.5em; }

div#alignments.blRes a { text-decoration: none; color: black; font-weight: bold; }

#footer {
display: none;
}

h1
{
font-size:120%;
font-weight:bold;
}
#FormatForm,#FormatDownload,#showDetails,#queryHelp,#dbDetails,.reslink
{
    display:none;
}
#multipleSeqs,#queryInfo,.skp,.resLink,.seqlinks,.msg
{
   display:none;
}

#dbDetails,#refInfo,#seealso,#resStat,#showRefs,dd.hidden
{
    display:none;
}
/*
#querysummary dl
{
 line-height:1.4em;
}

#querysummary dd
{
    margin-left:20%;
    margin-top:-1.2em;
}

#querysummary dd a
{
    display:none;
}
*/

#summary {
font-size:1.2em;
}
#summary {
margin-top:0pt;
padding-bottom:1em;
padding-top:0.5em;
font-family:Verdana,Arial,Sans-Serif;
font-size:90%;

}
#summarylists {
margin:1em 0pt 0pt;
overflow:hidden;
}
#querysummary {
float:left;
padding:0pt;
width:49%;
}

#dbsummary {
margin-left:51%;
padding:0pt;
}
#summary dl {
margin:0pt 0pt 0.5em;
padding:0pt;
}
#summary dt, #summary dd {
line-height:1.4em;
}
#summary dt {
float:left;
font-weight:bold;
text-align:right;
width:10em;
margin-top:0;
}
#summary dd {
margin-left:11em;
white-space:normal !important;
}
#summary h3 {
color:#444444;
font-style:italic;
margin-bottom:-0.5em;
margin-top:0pt;
text-align:center;
}
#ht,#graphic,#cddDesc
{
    text-align:center;
}

#ht
{
    font-weight:bold;
}

#graphic h3 a,#ovrInfo,#showCDD,.psiInp,.defln caption,#grView.hidden,#RSIFrameDesc
{
    display:none;
}


#grView.hidden.shown
{
    display:block;
}

.print-log-res { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }
.print-log-res li { list-style-image: url("images/img_blast_results_gif"); }

#SwitchDesign,#ytb,.fdb,#debug,.moreHsps,.shcl,#cntDesc,#descTblCtrl,.hdnHeader,td.c0,th.c0,.alnMsgS,.alnHdr,.relInf
{
    display:none;
}

h3.cap,#RSIFrameAln,.alnRn span, div.hsp .alnParLinks,.ui-ncbiautocomplete-link-pref,.ui-ncbiautocomplete-link-off
{
    display:none;
}

.alnAll
{
    margin-top:0.5emem;
}
.dlfRow
{
    line-height:1.5em;
}

span.r label
{
    margin-left:0.5em;
}
td.l a.deflnDesc
{
    font-weight:normal;
    text-decoration:none;
    color:inherit;
}
    
table.alnParams
{
    width:50em;
}
table.alnParams th
{
    font-size:100%;    
}

table.alnParams td
{
    font-size:110%;    
    padding-top:0.5em;
}

.oneSeqAln
{
    border-top:1px solid gery;
    margin-top:1em;
    padding-top:1em;
    width:60em;
}