annotate test-data/blast xml example4.html @ 35:2b23b4a4d88e

fix tool xml file name
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 18:15:04 +0200
parents 3bb5da68305e
children f611cf649c90
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/">
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6
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7 <title>Blast output</title>
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8
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9 <style>
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10 body {
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11 color: #333333;
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12 font-family: Arial,Sans-Serif;
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13 }
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14
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15 :link {
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16 color: #336699;
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17 }
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18
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19 .right {
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20 float: right;
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21 }
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22
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23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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24 #strip_html_warning {
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25 display: none;
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26 }
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27
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28 #content {
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29 margin: 0 2em;
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30 padding: 0.5em;
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31 border: 1px solid #888888;
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32 background-color: #d3dff5;
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33 }
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34
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35 h1, h2, h3, h4, h5, h6 {
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36 color: #2A6979;
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37 font-family: arial,verdana,sans-serif;
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38 letter-spacing: -1px;
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39 margin: 1.2em 0 0.3em;
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40 }
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41
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42 h1 {
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43 border-bottom: 1px solid #CCCCCC;
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44 font-size: 150%;
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45 padding-bottom: 0.1em;
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46 }
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47
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48 h2 {
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49 font-size: 120%;
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50 font-weight: bold;
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51 }
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52
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53 h4.darkHeader {
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54 color: #4D4D4D;
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55 letter-spacing: 0;
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56 font-weight: bold;
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57 }
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58
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59 #nodata {
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60 font-weight: bold;
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61 }
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62
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63 .index {
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64 margin-bottom: 3em;
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65 }
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66 .index div.indexentry {
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67 margin: 1.2em 1.6em;
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68 font-weight: bold;
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69 font-size: 100%;
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70 }
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71
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72 .headerdata {
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73 font-size: 90%;
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74 }
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75 .headerdata .param {
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76 font-weight: bold;
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77 text-align: right;
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78 padding: 0 1em;
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79 }
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80
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81 .grey {
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82 background-color: #eeeeee;
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83 border: 1px solid #cccccc;
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84 padding: 1em;
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85 }
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86
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87 .white {
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88 background-color: white;
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89 border: 1px solid #cccccc;
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90 padding: 1.5em 2%;
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91 }
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92
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93 .graphicrow {
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94 clear: left;
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95 width: 100%;
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96 }
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97
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98 .graphicitem {
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99 float: left;
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100 }
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101
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102
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103
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104 .graphics .grey {
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105 text-align: center;
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106 }
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107
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108 .graphic {
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109 background-color: white;
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110 border: 2px solid black;
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111 padding: 1.5em;
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112 margin: auto;
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113 }
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114
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115 .centered, .defline, div.legend, div.tablewrapper {
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116 margin-left: auto;
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117 margin-right: auto;
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118 }
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119
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120 .defline {
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121 background-color: white;
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122 border: 1px solid black;
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123 margin: .5em auto;
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124 padding-left: .2em;
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125 padding-right: .2em;
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126 max-width: 50em;
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127 text-align: left;
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128 height: 2.8em;
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129 overflow-y: hidden;
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130 }
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131
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132 div.legend {
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133 max-width: 40em;
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134 }
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135 div.legend div {
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136 width: 100%;
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137 color: white;
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138 font-weight: bold;
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139 border-spacing: 0;
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140 }
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141 div.legend div .graphicitem {
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142 width: 20%;
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143 padding: 0;
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144 margin: 0;
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145 border: none;
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146 }
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147
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148 div.tablewrapper {
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149 width: 50%;
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150 min-width: 60em;
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151 }
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152
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153 /* For small widths we give the graphic 100% */
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154 @media (max-width: 72.5em) {
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155 div.tablewrapper {
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156 width: 100%;
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157 min-width: 0px;
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158 }
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159 }
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160
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161 .scale {
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162 width: 100%;
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163 margin: .5em 0;
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164 font-weight: bold;
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165 }
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166 .scale div {
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167 color: red;
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168 text-align: left;
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169 }
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170 .scale .graphicrow {
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171 margin: .5em 0 .5em 0;
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172 color: white;
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173 }
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174 .scale .graphicitem {
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175 position: relative;
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176 }
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177 .scale .graphicitem div {
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178 margin: 0 1px;
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179 padding: 0 2px;
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180 text-align: right;
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181 background-color: red;
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182 color: white;
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183 }
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184 .scale .graphicitem:first-child div {
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185 margin-left: 0px;
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186 }
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187 .scale .graphicitem:last-child div {
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188 margin-right: 0px;
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189 }
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190 .scale .graphicitem .lastlabel {
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191 position: absolute;
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192 top: 0px;
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193 left: 100%;
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194 background-color: transparent;
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195 color: red;
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196 }
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197
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198 a.matchresult {
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199 display: block;
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200 margin: 0;
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201 padding: 0;
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202 }
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203 div.matchrow {
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204 margin-top: 4px;
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205 }
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206 div.matchrow, div.matchitem {
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207 height: 4px;
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208 }
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209
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210
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211 table.descriptiontable {
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212 font-size: 85%;
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213 border: 1px solid #97b0c8;
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214 border-spacing: 0;
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215 color: #222222;
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216 line-height: 1.3em;
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217 background-color: white;
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218 }
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219 table.descriptiontable col:first-child {
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220 width: 100%;
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221 }
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222 table.descriptiontable tr:hover {
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223 background-color: #D5DEE3;
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Jan Kanis <jan.code@jankanis.nl>
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224 }
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225 table.descriptiontable th {
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226 color: #14376C;
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227 font-weight: normal;
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Jan Kanis <jan.code@jankanis.nl>
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228 background-color: #F0F0F0;
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229 background: linear-gradient(#FFFFFF, #F0F0F0);
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230 border-bottom: 1px solid #D4DFE9;
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Jan Kanis <jan.code@jankanis.nl>
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231 border-right: 1px solid #CFCFCF;
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Jan Kanis <jan.code@jankanis.nl>
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232 border-left: 0px solid black;
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233 border-top: 0px solid black;
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parents:
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234 }
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Jan Kanis <jan.code@jankanis.nl>
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235 table.descriptiontable td {
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Jan Kanis <jan.code@jankanis.nl>
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236 overflow: hidden;
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Jan Kanis <jan.code@jankanis.nl>
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237 text-align: center;
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Jan Kanis <jan.code@jankanis.nl>
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238 padding: .4em .8em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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239 }
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Jan Kanis <jan.code@jankanis.nl>
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240 table.descriptiontable td div {
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Jan Kanis <jan.code@jankanis.nl>
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241 width: 1em;
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Jan Kanis <jan.code@jankanis.nl>
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242 overflow: visible;
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Jan Kanis <jan.code@jankanis.nl>
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243 white-space: nowrap;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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244 text-align: left;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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245 }
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Jan Kanis <jan.code@jankanis.nl>
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246
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Jan Kanis <jan.code@jankanis.nl>
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247
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248
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249 .alignments .white {
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Jan Kanis <jan.code@jankanis.nl>
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250 padding: 1.5em 1em;
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parents:
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251 }
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Jan Kanis <jan.code@jankanis.nl>
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252
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253 .alignment {
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Jan Kanis <jan.code@jankanis.nl>
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254 border-top: 1px solid black;
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Jan Kanis <jan.code@jankanis.nl>
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255 padding-left: 1em;
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Jan Kanis <jan.code@jankanis.nl>
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256 padding-right: 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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257 }
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Jan Kanis <jan.code@jankanis.nl>
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258
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259 div.linkheader {
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Jan Kanis <jan.code@jankanis.nl>
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260 padding-top: .2em;
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Jan Kanis <jan.code@jankanis.nl>
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261 font-size: 85%;
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Jan Kanis <jan.code@jankanis.nl>
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262 color: #14376C;
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263 }
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Jan Kanis <jan.code@jankanis.nl>
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264 div.linkheader a.linkheader {
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265 margin-right: 1em;
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Jan Kanis <jan.code@jankanis.nl>
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266 }
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Jan Kanis <jan.code@jankanis.nl>
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267 div.linkheader .right a {
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268 text-decoration: none;
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Jan Kanis <jan.code@jankanis.nl>
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269 }
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270
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271 .title .hittitle {
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272 color: #222222;
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273 margin-bottom: .3em;
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274 }
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275 .title .titleinfo {
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276 font-size: 80%;
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277 margin-top: 0;
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Jan Kanis <jan.code@jankanis.nl>
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278 margin-bottom: .3em;
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279 }
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280 .title .titleinfo .b {
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281 color: #606060;
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282 font-weight: bold;
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Jan Kanis <jan.code@jankanis.nl>
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283 font-size: 90%;
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parents:
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284 }
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285
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Jan Kanis <jan.code@jankanis.nl>
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286 .moretitles {
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Jan Kanis <jan.code@jankanis.nl>
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287 margin: 1.2em;
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Jan Kanis <jan.code@jankanis.nl>
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288 }
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289 .moretitles .titleinfo {
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Jan Kanis <jan.code@jankanis.nl>
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290 margin: 0;
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Jan Kanis <jan.code@jankanis.nl>
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291 padding: 0;
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Jan Kanis <jan.code@jankanis.nl>
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292 }
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Jan Kanis <jan.code@jankanis.nl>
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293 .moretitles .hittitle {
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Jan Kanis <jan.code@jankanis.nl>
parents:
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294 margin: .4em 0 .2em 0;
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Jan Kanis <jan.code@jankanis.nl>
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295 padding: 0;
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Jan Kanis <jan.code@jankanis.nl>
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296 }
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297
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Jan Kanis <jan.code@jankanis.nl>
parents:
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298 a.showmoretitles {
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Jan Kanis <jan.code@jankanis.nl>
parents:
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299 font-size: 75%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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300 color: #336699;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
301 font-weight: bold;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
302 margin-top: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
303 }
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
304 a.showmoretitles:hover {
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Jan Kanis <jan.code@jankanis.nl>
parents:
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305 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
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306
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parents:
diff changeset
307 .hotspot {
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Jan Kanis <jan.code@jankanis.nl>
parents:
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308 color: #606060;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
309 font-family: verdana, arial, sans-serif;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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310 margin-bottom: 2.5em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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311 }
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312
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diff changeset
313 .hotspot p.range {
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Jan Kanis <jan.code@jankanis.nl>
parents:
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314 font-size: 70%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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315 margin-top: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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316 margin-top: 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
317 margin-bottom: .2em;
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parents:
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318 }
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diff changeset
319 .hotspot p.range span.range {
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320 font-weight: bold;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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321 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
322 .hotspot p.range a.range {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
323 margin-left: .5em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
324 }
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
325
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parents:
diff changeset
326 table.hotspotstable {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
327 border-top: 1px solid;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
328 border-bottom: 1px solid;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
329 text-align: left;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
330 border-collapse: collapse;
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
331 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
332 table.hotspotstable th, table.hotspotstable td {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
333 padding: .1em 1em;
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
334 }
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
335 table.hotspotstable th {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
336 font-size: 70%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
337 }
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
338 table.hotspotstable td {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
339 min-width: 7em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
340 color: #222222;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
341 font-size: 80%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
342 }
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
343
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
344 pre.alignmentgraphic {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
345 color: #222222;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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346 }
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347
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348 footer {
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349 text-align: center;
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350 color: #cccccc;
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351 font-size: 70%;
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352 margin-top: 1em;
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353 }
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354 footer :link {
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355 color: #5588cc;
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356 }
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357
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358 </style>
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359
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360 <script type="text/javascript">
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361 function toggle_visibility(id) {
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362 var e = document.getElementById(id);
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363 if(e.style.display != 'block')
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364 e.style.display = 'block';
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365 else
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366 e.style.display = 'none';
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367 }
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368 </script>
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369
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370 </head>
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371
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372
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373 <body>
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374
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375 <div id="strip_html_warning">
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376 <!-- This div should be hidden by the header css block. Galaxy
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377 strips all css, breaking this page but making this warning
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378 visible. This warning contains some ugly old skool tabular html
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379 layout that is not stripped. -->
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380 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
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381 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
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382 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
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383 </b></font></td></tr></table>
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384 </div>
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385
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386 <div id=content>
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387
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388
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389 <section class=index>
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390 <h1>Queries</h1>
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391
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392 <div class=indexentry><a href="#match1">
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393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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394 (20 letters, 2 hits)
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395 </a></div>
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396 <div class=indexentry><a href="#match2">
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397 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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398 (20 letters, 0 hits)
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399 </a></div>
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400 <div class=indexentry><a href="#match3">
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401 Query_3: Probe|NOST-Spec_(Genetic_ID)
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402 (20 letters, 3 hits)
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403 </a></div>
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404 <div class=indexentry><a href="#match4">
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405 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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406 (24 letters, 0 hits)
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407 </a></div>
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408 <div class=indexentry><a href="#match5">
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409 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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410 (20 letters, 0 hits)
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411 </a></div>
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412 <div class=indexentry><a href="#match6">
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413 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
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414 (25 letters, 2 hits)
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415 </a></div>
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416 <div class=indexentry><a href="#match7">
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417 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
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418 (74 letters, 2 hits)
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419 </a></div>
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420
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421 </section>
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422
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423
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424 <section class=match id=match1>
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425
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426 <h1>Nucleotide Sequence (20 letters)</h1>
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427
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Jan Kanis <jan.code@jankanis.nl>
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428 <section class=header>
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429
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430 <table class=headerdata>
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431 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
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432 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
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433 <tr><td class=param>Query length:</td><td>20</td></tr>
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434 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
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435 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
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436 </table>
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437
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438 </section>
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439
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440
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441 <section class=graphics>
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442 <h2>Graphic Summary</h2>
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443
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444 <div class=grey>
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445 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
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446
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447 <div class=defline id=defline1>
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448 Mouse-over to show defline and scores, click to show alignments
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449 </div>
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450
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451 <div class=graphic>
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452 <h4 class=darkHeader>Color key for alignment scores</h4>
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453 <div class=legend><div class=graphicrow>
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454 <div class=graphicitem style="background-color: black">&lt;40</div>
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455 <div class=graphicitem style="background-color: blue">40–50</div>
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456 <div class=graphicitem style="background-color: green">50–80</div>
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457 <div class=graphicitem style="background-color: magenta">80–200</div>
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458 <div class=graphicitem style="background-color: red">200≤</div>
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Jan Kanis <jan.code@jankanis.nl>
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459 </div></div>
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460 <div style="clear: left"></div>
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461
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462 <div class=tablewrapper>
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463
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464 <div class=scale>
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Jan Kanis <jan.code@jankanis.nl>
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465 <div>query:</div>
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466 <div class=graphicrow>
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467 <div>
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468 <div class=graphicitem style="width: 10.0%">
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469 <div>2</div>
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470 </div>
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471 <div class=graphicitem style="width: 10.0%">
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472 <div>4</div>
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473 </div>
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474 <div class=graphicitem style="width: 10.0%">
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475 <div>6</div>
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Jan Kanis <jan.code@jankanis.nl>
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476 </div>
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477 <div class=graphicitem style="width: 10.0%">
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478 <div>8</div>
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479 </div>
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480 <div class=graphicitem style="width: 10.0%">
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481 <div>10</div>
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482 </div>
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Jan Kanis <jan.code@jankanis.nl>
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483 <div class=graphicitem style="width: 10.0%">
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484 <div>12</div>
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Jan Kanis <jan.code@jankanis.nl>
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485 </div>
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Jan Kanis <jan.code@jankanis.nl>
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486 <div class=graphicitem style="width: 10.0%">
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487 <div>14</div>
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488 </div>
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489 <div class=graphicitem style="width: 10.0%">
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490 <div>16</div>
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Jan Kanis <jan.code@jankanis.nl>
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491 </div>
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492 <div class=graphicitem style="width: 10.0%">
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493 <div>18</div>
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494 </div>
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Jan Kanis <jan.code@jankanis.nl>
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495 <div class=graphicitem style="width: 10.0%">
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496 <div>20</div>
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497 </div>
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Jan Kanis <jan.code@jankanis.nl>
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498 </div>
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Jan Kanis <jan.code@jankanis.nl>
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499 </div>
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500 <div style="clear: left"></div>
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501 </div>
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Jan Kanis <jan.code@jankanis.nl>
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502
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503 <a class=matchresult
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Jan Kanis <jan.code@jankanis.nl>
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504 href="#hit1"
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Jan Kanis <jan.code@jankanis.nl>
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505 onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
506 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
507 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
508 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
509 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
510 style="background-color: black; width: 100.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
511 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
512 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
513
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
514 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
515 href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
516 onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
517 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
518 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
519 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
520 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
521 style="background-color: black; width: 100.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
522 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
523 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
524
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
525 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
526 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
527 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
528 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
529
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
530
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
531
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
532 <section class=descriptions>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
533 <h2>Descriptions</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
534
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
535 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
536 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
537
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
538 <table class=descriptiontable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
539 <col/><col/><col/><col/><col/><col/><col/>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
540 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
541 <th>Description</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
542 <th>Max score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
543 <th>Total score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
544 <th>Query cover</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
545 <th>E value</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
546 <th>Ident</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
547 <th>Accession</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
548 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
549 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
550 <td><div><a href="#hit1"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
551 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
552 id="description1">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
553 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
554 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
555 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
556 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
557 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
558 <td>1.513e-07</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
559 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
560 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
561 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
562 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
563 <td><div><a href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
564 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
565 id="description2">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
566 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
567 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
568 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
569 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
570 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
571 <td>1.513e-07</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
572 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
573 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
574 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
575 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
576
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
577 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
578 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
579
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
580
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
581
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
582 <section class=alignments>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
583 <h2>Alignments</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
584
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
585 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
586 <div class=alignment id=hit1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
587
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
588 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
589 <div class=right><a href="#description1">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
590 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
591 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
592 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
593
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
594 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
595 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
596 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
597 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
598 <span class=b>Length:</span> 2457
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
599 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
600 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
601 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
602
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
603
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
604 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
605 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
606 <span class=range>Range 1: 2119 to 2138</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
607 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2119&amp;to=2138">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
608 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2119&amp;to=2138">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
609 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
610
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
611 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
612 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
613 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
614 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
615 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
616 <td>40.1 bits(20)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
617 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
618 <td>20/20(100%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
619 <td>0/20(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
620 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
621 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
622 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
623
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
624 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
625 ||||||||||||||||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
626 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
627 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
628
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
629 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
630
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
631 <div class=alignment id=hit2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
632
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
633 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
634 <div class=right><a href="#description2">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
635 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
636 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
637 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
638
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
639 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
640 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
641 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
642 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
643 <span class=b>Length:</span> 323
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
644 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
645 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
646 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
647
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
648
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
649 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
650 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
651 <span class=range>Range 1: 200 to 219</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
652 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=200&amp;to=219">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
653 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=200&amp;to=219">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
654 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
655
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
656 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
657 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
658 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
659 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
660 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
661 <td>40.1 bits(20)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
662 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
663 <td>20/20(100%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
664 <td>0/20(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
665 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
666 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
667 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
668
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
669 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
670 ||||||||||||||||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
671 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
672 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
673
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
674 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
675
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
676 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
677 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
678 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
679
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
680 <section class=match id=match2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
681
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
682 <h1>Nucleotide Sequence (20 letters)</h1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
683
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
684 <section class=header>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
685
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
686 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
687 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
688 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
689 <tr><td class=param>Query length:</td><td>20</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
690 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
691 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
692 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
693
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
694 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
695
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
696 <section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
697 <h2>No Hits</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
698 <div class=grey>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
699 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
700 <tr><td class=param>Message:</td><td>No hits found</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
701 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
702 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
703 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
704 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
705
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
706 <section class=match id=match3>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
707
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
708 <h1>Nucleotide Sequence (20 letters)</h1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
709
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
710 <section class=header>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
711
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
712 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
713 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
714 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
715 <tr><td class=param>Query length:</td><td>20</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
716 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
717 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
718 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
719
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
720 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
721
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
722
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
723 <section class=graphics>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
724 <h2>Graphic Summary</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
725
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
726 <div class=grey>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
727 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
728
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
729 <div class=defline id=defline3>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
730 Mouse-over to show defline and scores, click to show alignments
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
731 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
732
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
733 <div class=graphic>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
734 <h4 class=darkHeader>Color key for alignment scores</h4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
735 <div class=legend><div class=graphicrow>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
736 <div class=graphicitem style="background-color: black">&lt;40</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
737 <div class=graphicitem style="background-color: blue">40–50</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
738 <div class=graphicitem style="background-color: green">50–80</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
739 <div class=graphicitem style="background-color: magenta">80–200</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
740 <div class=graphicitem style="background-color: red">200≤</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
741 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
742 <div style="clear: left"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
743
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
744 <div class=tablewrapper>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
745
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
746 <div class=scale>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
747 <div>query:</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
748 <div class=graphicrow>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
749 <div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
750 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
751 <div>2</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
752 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
753 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
754 <div>4</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
755 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
756 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
757 <div>6</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
758 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
759 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
760 <div>8</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
761 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
762 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
763 <div>10</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
764 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
765 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
766 <div>12</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
767 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
768 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
769 <div>14</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
770 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
771 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
772 <div>16</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
773 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
774 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
775 <div>18</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
776 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
777 <div class=graphicitem style="width: 10.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
778 <div>20</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
779 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
780 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
781 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
782 <div style="clear: left"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
783 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
784
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
785 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
786 href="#hit1"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
787 onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
788 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
789 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
790 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
791 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
792 style="background-color: black; width: 100.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
793 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
794 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
795
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
796 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
797 href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
798 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
799 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
800 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
801 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
802 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
803 style="background-color: black; width: 100.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
804 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
805 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
806
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
807 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
808 href="#hit3"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
809 onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
810 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
811 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
812 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
813 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
814 style="background-color: transparent; width: 15.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
815 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
816 style="background-color: black; width: 85.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
817 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
818 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
819
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
820 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
821 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
822 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
823 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
824
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
825
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
826
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
827 <section class=descriptions>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
828 <h2>Descriptions</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
829
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
830 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
831 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
832
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
833 <table class=descriptiontable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
834 <col/><col/><col/><col/><col/><col/><col/>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
835 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
836 <th>Description</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
837 <th>Max score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
838 <th>Total score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
839 <th>Query cover</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
840 <th>E value</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
841 <th>Ident</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
842 <th>Accession</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
843 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
844 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
845 <td><div><a href="#hit1"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
846 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
847 id="description1">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
848 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
849 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
850 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
851 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
852 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
853 <td>1.513e-07</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
854 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
855 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
856 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
857 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
858 <td><div><a href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
859 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
860 id="description2">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
861 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
862 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
863 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
864 <td>40.1</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
865 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
866 <td>1.513e-07</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
867 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
868 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
869 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
870 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
871 <td><div><a href="#hit3"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
872 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
873 id="description3">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
874 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
875 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
876 <td>34.2</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
877 <td>34.2</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
878 <td>85%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
879 <td>9.334e-06</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
880 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
881 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">1</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
882 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
883 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
884
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
885 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
886 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
887
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
888
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
889
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
890 <section class=alignments>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
891 <h2>Alignments</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
892
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
893 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
894 <div class=alignment id=hit1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
895
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
896 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
897 <div class=right><a href="#description1">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
898 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
899 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
900 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
901
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
902 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
903 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
904 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
905 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
906 <span class=b>Length:</span> 2457
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
907 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
908 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
909 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
910
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
911
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
912 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
913 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
914 <span class=range>Range 1: 2143 to 2162</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
915 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2143&amp;to=2162">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
916 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2143&amp;to=2162">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
917 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
918
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
919 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
920 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
921 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
922 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
923 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
924 <td>40.1 bits(20)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
925 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
926 <td>20/20(100%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
927 <td>0/20(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
928 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
929 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
930 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
931
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
932 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
933 ||||||||||||||||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
934 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
935 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
936
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
937 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
938
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
939 <div class=alignment id=hit2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
940
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
941 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
942 <div class=right><a href="#description2">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
943 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
944 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
945 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
946
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
947 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
948 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
949 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
950 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
951 <span class=b>Length:</span> 323
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
952 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
953 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
954 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
955
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
956
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
957 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
958 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
959 <span class=range>Range 1: 224 to 243</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
960 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=224&amp;to=243">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
961 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=224&amp;to=243">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
962 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
963
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
964 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
965 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
966 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
967 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
968 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
969 <td>40.1 bits(20)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
970 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
971 <td>20/20(100%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
972 <td>0/20(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
973 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
974 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
975 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
976
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
977 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
978 ||||||||||||||||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
979 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
980 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
981
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
982 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
983
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
984 <div class=alignment id=hit3>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
985
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
986 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
987 <div class=right><a href="#description3">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
988 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
989 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
990 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
991
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
992 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
993 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
994 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
995 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">1</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
996 <span class=b>Length:</span> 1045
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
997 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
998 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
999 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1001
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1002 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1003 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1004 <span class=range>Range 1: 2 to 18</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1005 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2&amp;to=18">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1006 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2&amp;to=18">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1007 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1008
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1009 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1010 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1011 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1012 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1013 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1014 <td>34.2 bits(17)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1015 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1016 <td>17/17(100%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1017 <td>0/17(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1018 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1019 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1020 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1021
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1022 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1023 |||||||||||||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1024 Subject 2 GCGCGGTGTCATCTATG 18</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1025 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1026
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1027 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1028
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1029 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1030 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1031 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1032
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1033 <section class=match id=match4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1034
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1035 <h1>Nucleotide Sequence (24 letters)</h1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1036
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1037 <section class=header>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1038
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1039 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1040 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1041 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1042 <tr><td class=param>Query length:</td><td>20</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1043 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1044 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1045 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1046
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1047 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1048
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1049 <section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1050 <h2>No Hits</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1051 <div class=grey>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1052 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1053 <tr><td class=param>Message:</td><td>No hits found</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1054 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1055 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1056 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1057 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1058
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1059 <section class=match id=match5>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1060
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1061 <h1>Nucleotide Sequence (20 letters)</h1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1062
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1063 <section class=header>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1064
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1065 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1066 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1067 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1068 <tr><td class=param>Query length:</td><td>20</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1069 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1070 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1071 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1072
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1073 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1074
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1075 <section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1076 <h2>No Hits</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1077 <div class=grey>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1078 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1079 <tr><td class=param>Message:</td><td>No hits found</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1080 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1081 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1082 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1083 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1084
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1085 <section class=match id=match6>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1086
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1087 <h1>Nucleotide Sequence (25 letters)</h1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1088
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1089 <section class=header>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1090
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1091 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1092 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1093 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1094 <tr><td class=param>Query length:</td><td>20</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1095 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1096 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1097 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1098
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1099 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1100
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1101
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1102 <section class=graphics>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1103 <h2>Graphic Summary</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1104
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1105 <div class=grey>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1106 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1107
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1108 <div class=defline id=defline6>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1109 Mouse-over to show defline and scores, click to show alignments
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1110 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1111
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1112 <div class=graphic>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1113 <h4 class=darkHeader>Color key for alignment scores</h4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1114 <div class=legend><div class=graphicrow>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1115 <div class=graphicitem style="background-color: black">&lt;40</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1116 <div class=graphicitem style="background-color: blue">40–50</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1117 <div class=graphicitem style="background-color: green">50–80</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1118 <div class=graphicitem style="background-color: magenta">80–200</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1119 <div class=graphicitem style="background-color: red">200≤</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1120 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1121 <div style="clear: left"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1122
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1123 <div class=tablewrapper>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1124
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1125 <div class=scale>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1126 <div>query:</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1127 <div class=graphicrow>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1128 <div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1129 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1130 <div>3</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1131 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1132 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1133 <div>6</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1134 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1135 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1136 <div>9</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1137 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1138 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1139 <div>12</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1140 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1141 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1142 <div>15</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1143 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1144 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1145 <div>18</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1146 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1147 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1148 <div>21</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1149 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1150 <div class=graphicitem style="width: 12.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1151 <div>24</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1152 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1153 <div class=graphicitem style="width: 4.0%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1154 <div>25</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1155 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1156 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1157 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1158 <div style="clear: left"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1159 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1160
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1161 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1162 href="#hit1"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1163 onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1164 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1165 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1166 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1167 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1168 style="background-color: black; width: 88.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1169 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1170 style="background-color: transparent; width: 12.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1171 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1172 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1173
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1174 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1175 href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1176 onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1177 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1178 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1179 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1180 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1181 style="background-color: black; width: 88.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1182 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1183 style="background-color: transparent; width: 12.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1184 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1185 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1186
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1187 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1188 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1189 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1190 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1191
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1192
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1193
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1194 <section class=descriptions>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1195 <h2>Descriptions</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1196
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1197 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1198 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1199
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1200 <table class=descriptiontable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1201 <col/><col/><col/><col/><col/><col/><col/>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1202 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1203 <th>Description</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1204 <th>Max score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1205 <th>Total score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1206 <th>Query cover</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1207 <th>E value</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1208 <th>Ident</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1209 <th>Accession</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1210 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1211 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1212 <td><div><a href="#hit1"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1213 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1214 id="description1">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1215 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1216 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1217 <td>36.2</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1218 <td>36.2</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1219 <td>88%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1220 <td>3.148e-06</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1221 <td>95%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1222 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1223 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1224 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1225 <td><div><a href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1226 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1227 id="description2">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1228 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1229 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1230 <td>36.2</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1231 <td>36.2</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1232 <td>88%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1233 <td>3.148e-06</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1234 <td>95%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1235 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1236 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1237 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1238
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1239 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1240 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1241
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1242
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1243
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1244 <section class=alignments>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1245 <h2>Alignments</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1246
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1247 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1248 <div class=alignment id=hit1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1249
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1250 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1251 <div class=right><a href="#description1">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1252 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1253 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1254 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1255
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1256 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1257 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1258 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1259 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1260 <span class=b>Length:</span> 4983
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1261 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1262 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1263 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1264
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1265
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1266 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1267 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1268 <span class=range>Range 1: 2344 to 2365</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1269 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2344&amp;to=2365">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1270 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2344&amp;to=2365">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1271 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1272
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1273 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1274 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1275 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1276 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1277 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1278 <td>36.2 bits(18)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1279 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1280 <td>21/22(95%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1281 <td>0/22(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1282 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1283 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1284 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1285
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1286 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1287 |||||||||||||| |||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1288 Subject 2344 ACATGAACAGCGCCCTGACCAC 2365</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1289 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1290
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1291 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1292
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1293 <div class=alignment id=hit2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1294
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1295 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1296 <div class=right><a href="#description2">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1297 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1298 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1299 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1300
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1301 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1302 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1303 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1304 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1305 <span class=b>Length:</span> 4180
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1306 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1307 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1308 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1309
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1310
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1311 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1312 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1313 <span class=range>Range 1: 1541 to 1562</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1314 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=1541&amp;to=1562">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1315 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=1541&amp;to=1562">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1316 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1317
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1318 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1319 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1320 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1321 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1322 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1323 <td>36.2 bits(18)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1324 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1325 <td>21/22(95%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1326 <td>0/22(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1327 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1328 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1329 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1330
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1331 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1332 |||||||||||||| |||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1333 Subject 1541 ACATGAACAGCGCCCTGACCAC 1562</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1334 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1335
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1336 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1337
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1338 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1339 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1340 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1341
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1342 <section class=match id=match7>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1343
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1344 <h1>Nucleotide Sequence (74 letters)</h1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1345
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1346 <section class=header>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1347
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1348 <table class=headerdata>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1349 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1350 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1351 <tr><td class=param>Query length:</td><td>20</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1352 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1353 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1354 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1355
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1356 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1357
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1358
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1359 <section class=graphics>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1360 <h2>Graphic Summary</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1361
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1362 <div class=grey>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1363 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1364
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1365 <div class=defline id=defline7>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1366 Mouse-over to show defline and scores, click to show alignments
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1367 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1368
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1369 <div class=graphic>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1370 <h4 class=darkHeader>Color key for alignment scores</h4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1371 <div class=legend><div class=graphicrow>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1372 <div class=graphicitem style="background-color: black">&lt;40</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1373 <div class=graphicitem style="background-color: blue">40–50</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1374 <div class=graphicitem style="background-color: green">50–80</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1375 <div class=graphicitem style="background-color: magenta">80–200</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1376 <div class=graphicitem style="background-color: red">200≤</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1377 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1378 <div style="clear: left"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1379
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1380 <div class=tablewrapper>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1381
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1382 <div class=scale>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1383 <div>query:</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1384 <div class=graphicrow>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1385 <div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1386 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1387 <div>8</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1388 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1389 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1390 <div>16</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1391 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1392 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1393 <div>24</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1394 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1395 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1396 <div>32</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1397 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1398 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1399 <div>40</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1400 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1401 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1402 <div>48</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1403 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1404 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1405 <div>56</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1406 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1407 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1408 <div>64</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1409 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1410 <div class=graphicitem style="width: 10.81081081081081%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1411 <div>72</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1412 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1413 <div class=graphicitem style="width: 2.7027027027027026%">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1414 <div>&nbsp;</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1415 <div class=lastlabel>74</div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1416 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1417 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1418 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1419 <div style="clear: left"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1420 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1421
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1422 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1423 href="#hit1"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1424 onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1425 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1426 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1427 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1428 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1429 style="background-color: green; width: 100.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1430 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1431 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1432
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1433 <a class=matchresult
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1434 href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1435 onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1436 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1437 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1438 <div class="matchrow graphicrow">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1439 <div class="matchitem graphicitem"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1440 style="background-color: green; width: 100.0%"></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1441 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1442 </a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1443
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1444 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1445 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1446 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1447 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1448
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1449
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1450
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1451 <section class=descriptions>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1452 <h2>Descriptions</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1453
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1454 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1455 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1456
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1457 <table class=descriptiontable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1458 <col/><col/><col/><col/><col/><col/><col/>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1459 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1460 <th>Description</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1461 <th>Max score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1462 <th>Total score</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1463 <th>Query cover</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1464 <th>E value</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1465 <th>Ident</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1466 <th>Accession</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1467 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1468 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1469 <td><div><a href="#hit1"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1470 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1471 id="description1">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1472 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1473 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1474 <td>67.9</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1475 <td>67.9</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1476 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1477 <td>3.564e-15</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1478 <td>86%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1479 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1480 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1481 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1482 <td><div><a href="#hit2"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1483 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1484 id="description2">
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1485 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1486 </a></div></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1487 <td>67.9</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1488 <td>67.9</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1489 <td>100%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1490 <td>3.564e-15</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1491 <td>86%</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1492 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a></td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1493 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1494 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1495
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1496 </div></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1497 </section>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1498
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1499
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1500
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1501 <section class=alignments>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1502 <h2>Alignments</h2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1503
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1504 <div class=grey><div class=white>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1505 <div class=alignment id=hit1>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1506
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1507 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1508 <div class=right><a href="#description1">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1509 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1510 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1511 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1512
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1513 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1514 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1515 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1516 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1517 <span class=b>Length:</span> 4983
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1518 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1519 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1520 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1521
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1522
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1523 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1524 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1525 <span class=range>Range 1: 2319 to 2392</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1526 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2319&amp;to=2392">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1527 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2319&amp;to=2392">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1528 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1529
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1530 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1531 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1532 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1533 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1534 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1535 <td>67.9 bits(34)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1536 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1537 <td>64/74(86%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1538 <td>0/74(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1539 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1540 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1541 </table>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1542
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1543 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1544 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1545 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 2392</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1546 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1547
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1548 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1549
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1550 <div class=alignment id=hit2>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1551
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1552 <div class=linkheader>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1553 <div class=right><a href="#description2">Descriptions</a></div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1554 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1555 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1556 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1557
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1558 <div class=title>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1559 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1560 <p class=titleinfo>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1561 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1562 <span class=b>Length:</span> 4180
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1563 <span class=b>Number of Matches:</span> 1
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1564 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1565 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1566
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1567
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1568 <div class=hotspot>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1569 <p class=range>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1570 <span class=range>Range 1: 1516 to 1589</span>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1571 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=1516&amp;to=1589">GenBank</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1572 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=1516&amp;to=1589">Graphics</a>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1573 </p>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1574
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1575 <table class=hotspotstable>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1576 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1577 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1578 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1579 <tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1580 <td>67.9 bits(34)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1581 <td>0.0</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1582 <td>64/74(86%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1583 <td>0/74(0%)</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1584 <td>Plus/Plus</td>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1585 </tr>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1586 </table>
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1587
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1588 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1589 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
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Jan Kanis <jan.code@jankanis.nl>
parents:
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1590 Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 1589</pre>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1591 </div>
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1592
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
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1593 </div>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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1594
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1595 </div></div>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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1596 </section>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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1597 </section>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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1598
ce8f29efc0a1 fix tests
Jan Kanis <jan.code@jankanis.nl>
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1599 </div>
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Jan Kanis <jan.code@jankanis.nl>
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1600
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Jan Kanis <jan.code@jankanis.nl>
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1601 <footer>
33
3bb5da68305e add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
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diff changeset
1602 This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>.
32
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1603 </footer>
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1604 </body>
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1605 </html>
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1606