Mercurial > repos > jankanis > blast2html
annotate NCBI Blast reference example_files/blast.js @ 75:4d2c25baf5a3 py2.6
Fix rounding errors
author | Jan Kanis <jan.code@jankanis.nl> |
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date | Wed, 18 Jun 2014 17:50:32 +0200 |
parents | 344cd76f6fd2 |
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2 function printfire() |
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3 { |
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4 // Firefox |
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5 if (document.createEvent && window.dispatchEvent) { |
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6 printfire.args = arguments; |
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7 var ev = document.createEvent("Events"); |
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8 ev.initEvent("printfire", false, true); |
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9 window.dispatchEvent(ev); |
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10 } |
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11 } |
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12 //This functions handle setting defaults for protein or nulcleotide suite search page when |
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13 //one of blast program radio buttons is clicked - not used now |
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14 function AdjustMoreOptionsStyle() |
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15 { |
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16 var optsEl = document.getElementById("moreopts"); |
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17 if(optsEl && optsEl.style.height != "0px") { |
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18 optsEl.style.height = optsEl.scrollHeight + "px"; |
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19 } |
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20 } |
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21 |
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22 //Strip (taxid:XXX) from organism list selection |
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23 //sgRunFunc="AdjustOrganism();" |
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24 function AdjustOrganism() |
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25 { |
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26 var words = $("qorganism").value.split(" (taxid"); |
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27 $("qorganism").value = words[0]; |
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28 } |
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29 |
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30 |
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31 /* JS Common to all BLAST pages */ |
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32 |
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33 |
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34 function setResultsTarget() |
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35 { |
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36 //var newWin = $("newwin"); |
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37 var newWin = this; |
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38 var searchFrm = $(newWin.getAttribute("form")); |
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39 if(newWin && newWin.checked == true) { |
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40 if(newWin.getAttribute("winType") == "random") { |
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41 searchFrm.target = "Blast_Results_for_" + Math.floor(Math.pow(10,10) *Math.random()); |
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42 } |
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43 else { |
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44 searchFrm.target = $("resPageTarget").value; |
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45 } |
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46 } |
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47 else { |
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48 searchFrm.target = ""; |
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49 } |
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50 } |
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51 |
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52 function diffFromDefault(elem) |
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53 { |
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54 var currentVal = ""; |
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55 var ret = 0; |
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56 |
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57 if (!(elem)) return; |
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58 var defVal = elem.getAttribute("defVal"); //Default value |
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59 var elShowDiff = utils.getParent(elem); |
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60 if(!elem.type) {//div element for example |
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61 //Check if parent elem has "hide" class |
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62 if(utils.hasClass(utils.getParent(elem), "hide")) { |
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63 currentVal = "hide"; |
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64 } |
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65 else { |
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66 currentVal = "show"; |
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67 } |
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68 elShowDiff = elem; |
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69 } |
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70 else if(elem.type == "select-one") { |
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71 if(elem[elem.selectedIndex].value) currentVal = elem[elem.selectedIndex].value; |
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72 //If Default value is not specified - the first one in the selection list is the default |
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73 if (!defVal && elem[0].value) defVal = elem[0].value; |
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74 } |
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75 else if(elem.type == "select-multiple") { |
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76 currentVal = "";//for now |
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77 } |
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78 else if(elem.type == "checkbox") { |
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79 //alert("defVal1=" + elem.id + " " + defVal); |
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80 //var defVal = elem.defVal; //Default value |
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81 //alert("defVal2=" + defVal); |
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82 if(elem.checked == true) currentVal = "checked" |
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83 else currentVal = "unchecked"; |
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84 } |
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85 else { |
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86 currentVal = elem.value; |
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87 } |
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88 |
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89 |
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90 var numdiff = parseInt($("NUM_DIFFS").value,10); |
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91 var optsNumDiff = parseInt($("NUM_OPTS_DIFFS").value,10); |
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92 if(defVal != currentVal) { |
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93 if(!utils.hasClass(elShowDiff, "nondef")) { |
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94 utils.addClass(elShowDiff, "nondef"); |
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95 numdiff++; |
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96 if(utils.hasClass(elem,"opts")) optsNumDiff++; |
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97 } |
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98 ret = 1; |
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99 } |
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100 else { |
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101 if(utils.hasClass(elShowDiff, "nondef")) { |
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102 utils.removeClass(elShowDiff, "nondef"); |
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103 //alert("noDiff-" + elem.id); |
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104 if(numdiff != 0) numdiff--; |
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105 if(utils.hasClass(elem,"opts")) optsNumDiff--; |
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106 } |
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107 ret=0; |
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108 } |
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109 $("NUM_DIFFS").value = numdiff; |
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110 $("NUM_OPTS_DIFFS").value = optsNumDiff; |
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111 if(numdiff > 0) { |
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112 $("diffMes").style.display = "inline"; |
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113 } |
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114 else { |
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115 $("diffMes").style.display = "none"; |
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116 } |
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117 //alert(elem.id + " " + $("NUM_DIFFS").value); |
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118 return ret; |
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119 } |
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120 |
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121 function setDefalValue(elem) |
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122 { |
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123 var currentVal; |
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124 var defVal = elem.getAttribute("defVal"); //Default value |
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125 if(elem.type == "select-one") { |
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126 //If Default value is not specified - the first one in the selection list is the default |
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127 if(!defVal) defVal = elem[0].value; |
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128 for(j=0; j < elem.options.length; j++) { |
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129 if(elem.options[j].value == defVal) { |
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130 elem.options[j].selected = true; |
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131 break; |
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132 } |
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133 } |
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134 } |
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135 else if(elem.type == "checkbox" || elem.type == "radio") { |
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136 if(!defVal) defVal = "checked"; |
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137 if(defVal == "checked") elem.checked = true |
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138 else elem.checked = false; |
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139 } |
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140 else { |
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141 if(!defVal) defVal = ""; |
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142 elem.value = defVal; |
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143 } |
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144 |
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145 var elShowDiff = utils.getParent(elem); |
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146 if(utils.hasClass(elShowDiff, "nondef")) { |
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147 utils.removeClass(elShowDiff, "nondef"); |
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148 } |
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149 //alert(elem.id + " " + $("NUM_DIFFS").value); |
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150 } |
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151 |
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152 function newResultsWinInit() { |
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153 jQuery("[class='newwin']").each(function(index) { |
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154 utils.addEvent(this, "click", setResultsTarget, false); |
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155 }); |
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156 } |
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157 |
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158 function resetOrganismSuggest(orgEntryElem) |
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159 { |
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160 //suggestHint is in the hidden field used for SRA |
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161 var defaultMessage = ($("suggestHint")) ? $("suggestHint").value : "Enter organism name or id--completions will be suggested"; |
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162 var suggestHint = $("qorganism").getAttribute("suggestHint"); |
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163 if(suggestHint) defaultMessage = suggestHint; |
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164 if(orgEntryElem.value == "") { |
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165 orgEntryElem.value = defaultMessage; |
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166 } |
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167 if(orgEntryElem.value == defaultMessage) { |
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168 utils.addClass(orgEntryElem,"orgHint"); |
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169 } |
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170 } |
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171 |
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172 function setupOrganismSuggest(orgEntryElem) |
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173 { |
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174 resetOrganismSuggest(orgEntryElem); |
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175 utils.addEvent(orgEntryElem, "focus", function() { |
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176 clearOrgSuggest(orgEntryElem); |
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177 }, false); |
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178 } |
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179 |
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180 function clearOrgSuggest(orgEntryElem) |
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181 { |
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182 if(utils.hasClass(orgEntryElem,"orgHint")) { |
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183 orgEntryElem.value=""; |
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184 utils.removeClass(orgEntryElem,"orgHint"); |
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185 } |
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186 } |
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187 |
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188 function InitCustomButton(bn) |
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189 { |
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190 utils.addEvent(bn, "mouseover", function() {this.src = this.getAttribute("mouseovImg");}, false); |
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191 utils.addEvent(bn, "mouseout", function() {this.src = this.getAttribute("mouseoutImg");}, false); |
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192 utils.addEvent(bn, "mousedown", function() {this.src = this.getAttribute("mousedownImg");}, false); |
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193 utils.addEvent(bn, "mouseup", function() {this.src = this.getAttribute("mouseupImg");}, false); |
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194 } |
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195 |
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196 function showHideElem(id,hide) |
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197 { |
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198 if($(id)) { |
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199 if(hide) { |
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200 if(!utils.hasClass($(id),"hidden")) utils.addClass($(id), "hidden"); |
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201 } |
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202 else { |
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203 if(utils.hasClass($(id),"hidden")) utils.removeClass($(id), "hidden"); |
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204 } |
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205 } |
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206 } |
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207 |
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208 function resetOrganismControls(orgEntryElem) { |
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209 resetOrganismSuggest(orgEntryElem); |
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210 if ($("orgExcl")) $("orgExcl").checked = false; |
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211 utils.replaceInHtml("", $("orgs")); |
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212 if ($("frOrgs")) utils.replaceInHtml("", $("frOrgs")); |
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213 if ($("numOrg")) $("numOrg").value = 1; |
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214 } |
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215 |
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216 function AddOrgRow(e,orgName,exclName) { |
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217 e = e || window.event; |
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218 utils.preventDefault(e); |
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219 var checkedExclude = new Array(); |
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220 var orgDict = jQuery($($("qorganism"))).ncbiautocomplete("option","dictionary"); |
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221 orgDict = (!orgDict || orgDict == "") ? "taxids_sg" : orgDict; |
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222 var len = $("qorganism").getAttribute("size"); |
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223 |
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224 var newOrgFieldID = "qorganism" + $("numOrg").value; |
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225 var newOrgField = " <div><input name=\"" + orgName + $("numOrg").value + "\" size=\"" + len + "\" id=\"" + newOrgFieldID + |
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226 "\" type=\"text\" data-jigconfig=\"dictionary:'" + orgDict + "'\" autocomplete=\"off\" class=\"jig-ncbiautocomplete multiOrg\" />"; |
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227 if (exclName != "") { |
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228 newOrgField += "<span class=\"orgExcl\">" + |
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229 "<input type=\"checkbox\" name=\"" + exclName + $("numOrg").value + "\" class=\"oExcl cb\" id=\"orgExcl" + $("numOrg").value + "\" />" + |
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230 "<label for=\"orgExcl" + $("numOrg").value + "\" class=\"right oExclRl\">Exclude</label></span>"; |
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231 } |
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232 newOrgField += "</div>"; |
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233 if (navigator.userAgent.match(/ie/i)) { |
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234 for (i = 1; i < $("numOrg").value; i++) { |
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235 if ($("orgExcl" + i)) checkedExclude[i] = $("orgExcl" + i).checked; |
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236 } |
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237 } |
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238 if (!navigator.userAgent.match(/firefox/i)) { |
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239 jQuery($($(orgs))).append(newOrgField,true); |
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240 } |
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241 else { |
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242 utils.insertInHtml(newOrgField, $("orgs")); |
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243 } |
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244 |
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245 if (navigator.userAgent.match(/ie/i)) { |
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246 for (i = 1; i < $("numOrg").value; i++) { |
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247 if ($("orgExcl" + i)) $("orgExcl" + i).checked = checkedExclude[i]; |
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248 } |
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249 } |
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250 setupOrganismSuggest($(newOrgFieldID)); |
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251 jQuery($($(newOrgFieldID))).ncbiautocomplete(); |
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252 $("numOrg").value++; |
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253 } |
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254 |
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255 function adjustOrgVal(orgEntryElem) |
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256 { |
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257 //if (utils.hasClass($("searchForm").EQ_MENU, "orgHint")) $("searchForm").EQ_MENU.value = ""; |
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258 clearOrgSuggest(orgEntryElem); |
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259 if ($("numOrg")) { |
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260 for (i = 1; i < $("numOrg").value; i++) { |
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261 if ($("qorganism" + i)) { |
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262 clearOrgSuggest($("qorganism" + i)); |
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263 } |
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264 } |
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265 } |
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266 } |
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267 |
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268 function getUrlCompForEntryField(elem) { |
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269 var url = ""; |
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270 if (elem && elem.value != "") { |
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271 url = "&" + elem.name + "=" + escape(elem.value); |
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272 } |
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273 return url; |
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274 } |
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275 |
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276 |
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277 function getUrlCompForCheckedField(elem) { |
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278 var url = ""; |
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279 if (elem && elem.checked) { |
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280 url = "&" + elem.name + "=" + elem.value; |
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281 } |
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282 return url; |
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283 |
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284 } |
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285 |
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286 function getUrlCompForOptionsField(elem) { |
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287 var url = ""; |
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288 if (elem) { |
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289 url = "&" + elem.name + "=" + elem[elem.selectedIndex].value; |
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290 } |
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291 return url; |
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292 } |
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293 |
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294 function getUrlCompForMultiOptionsField(elem) { |
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295 var url = ""; |
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296 if (elem) { |
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297 for (i = 0; i < elem.options.length; i++) { |
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298 if (elem.options[i].selected) { |
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299 url += "&" + elem.name + "=" + elem.options[i].value; |
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300 } |
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301 } |
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302 } |
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303 return url; |
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304 } |
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305 |
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306 |
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307 utils.addEvent(window, 'load', newResultsWinInit, false); |
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308 |