Mercurial > repos > jankanis > blast2html
annotate tool_dependencies.xml @ 124:6719353162b0
change sanitize_all_html warning style
author | Jan Kanis <jan.code@jankanis.nl> |
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date | Mon, 11 Aug 2014 17:32:09 +0200 |
parents | df9fd5f35967 |
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1 <?xml version="1.0"?> |
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2 <tool_dependency> |
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3 <package name="libxml2" version="2.9.1"> |
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4 <repository name="package_libxml2_2_9_1" owner="jankanis" prior_installation_required="True" |
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5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0" /> |
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6 </package> |
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7 |
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8 <package name="libxslt" version="1.1.28"> |
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9 <repository name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" |
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10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" /> |
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11 </package> |
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12 |
89 | 13 <package name="zlib" version="1.2.8"> |
14 <repository name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" | |
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15 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="63a4a902cda2" /> |
89 | 16 </package> |
17 | |
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18 <package name="blast2html_venv" version="0.2"> |
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19 <install version="1.0"> |
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20 <actions> |
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21 <action type="set_environment_for_install"> |
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22 <repository name="package_libxml2_2_9_1" owner="jankanis" |
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23 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0"> |
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24 <package name="libxml2" version="2.9.1" /> |
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25 </repository> |
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26 <repository name="package_libxslt_1_1_28" owner="devteam" |
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27 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee"> |
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28 <package name="libxslt" version="1.1.28" /> |
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29 </repository> |
89 | 30 <repository name="package_zlib_1_2_8" owner="iuc" |
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31 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="63a4a902cda2"> |
89 | 32 <package name="zlib" version="1.2.8" /> |
33 </repository> | |
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34 </action> |
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35 |
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36 <action type="setup_virtualenv"> |
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37 jinja2==2.7.3 |
86 | 38 six==1.7.2 |
39 argparse==1.2.1 | |
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40 </action> |
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41 |
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42 <!-- install lxml manually, as the setup_virtualenv action does not include the environment |
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43 from set_environment_for_install but shell_command does --> |
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44 <action type="shell_command"> |
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45 $INSTALL_DIR/venv/bin/pip install lxml==3.3.5 |
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46 </action> |
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47 |
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48 <action type="set_environment"> |
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49 <!-- add libxml2/zlib library paths so the runtime can find the shared libraries --> |
91 | 50 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable> |
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51 </action> |
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52 </actions> |
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53 </install> |
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54 <readme>A Python 2 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme> |
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55 </package> |
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56 |
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57 </tool_dependency> |