Mercurial > repos > jankanis > blast2html
annotate test-data/refresh_test_results.sh @ 125:8205546ba86c
merge 844d121d0485 so Tool Shed doesn't see multiple heads
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Tue, 07 Jul 2015 09:28:08 +0200 |
| parents | b3b5ee557170 |
| children |
| rev | line source |
|---|---|
|
33
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
1 #!/bin/sh |
|
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
2 |
|
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
3 # run this from the directory it exists in to update the test outputs |
|
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
4 |
| 77 | 5 set -eu |
| 6 | |
| 105 | 7 for i in 1 2 3 4 |
| 8 do | |
| 9 "$@" ../blast2html.py -i "blast xml example$i.xml" -o "blast xml example$i.html" | |
| 10 done | |
|
98
e780606b7c25
test new command line parameters, fix small bug
Jan Kanis <jan.code@jankanis.nl>
parents:
77
diff
changeset
|
11 |
| 105 | 12 "$@" ../blast2html.py -i "blast xml example3.xml" -o "blast xml example3b.html" --genelink-template 'http://example.com/example-genebank?id={fullid}' |
| 13 "$@" ../blast2html.py -i "blast xml example4.xml" -o "blast xml example4b.html" --db-config-dir . | |
| 14 |