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annotate tool_dependencies.xml @ 121:844d121d0485 py2.6

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author Jan Kanis <jan.code@jankanis.nl>
date Thu, 31 Jul 2014 16:49:27 +0200
parents 62aac637dd6c
children 8a712d393559
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libxml2" version="2.9.1">
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4 <repository name="package_libxml2_2_9_1" owner="jankanis" prior_installation_required="True"
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5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0" />
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6 </package>
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8 <package name="libxslt" version="1.1.28">
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9 <repository name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True"
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10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" />
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11 </package>
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12
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13 <package name="blast2html_venv" version="0.2">
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14 <install version="1.0">
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15 <actions>
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16 <action type="set_environment_for_install">
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17 <repository name="package_libxml2_2_9_1" owner="jankanis"
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18 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0">
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19 <package name="libxml2" version="2.9.1" />
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20 </repository>
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21 <repository name="package_libxslt_1_1_28" owner="devteam"
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22 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee">
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23 <package name="libxslt" version="1.1.28" />
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24 </repository>
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25 </action>
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27 <action type="setup_virtualenv">
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28 jinja2==2.7.3
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29 six==1.7.2
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30 argparse==1.2.1
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31 </action>
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33 <!-- install lxml manually, as the setup_virtualenv action does not include the environment
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34 from set_environment_for_install but shell_command does -->
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35 <action type="shell_command">
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36 $INSTALL_DIR/venv/bin/pip install lxml==3.3.5
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37 </action>
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39 <action type="set_environment">
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40 <!-- add libxml2 library path so the runtime can find the shared library -->
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41 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LIBXML_ROOT_PATH]/lib</environment_variable>
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42 </action>
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43 </actions>
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44 </install>
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45 <readme>A Python 2 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme>
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46 </package>
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48 </tool_dependency>