annotate test-data/blast xml example4.xml @ 109:ea3bc0b9a3d9

fix (again) output encoding
author Jan Kanis <jan.code@jankanis.nl>
date Tue, 08 Jul 2014 17:51:22 +0200
parents 0ef071bba164
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
25
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1 <?xml version="1.0"?>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
3 <BlastOutput>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
4 <BlastOutput_program>blastn</BlastOutput_program>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
5 <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
7 <BlastOutput_db>/opt/galaxy/blastdbs/EUginius_plasmid_insert</BlastOutput_db>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
9 <BlastOutput_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</BlastOutput_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
10 <BlastOutput_query-len>20</BlastOutput_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
11 <BlastOutput_param>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
12 <Parameters>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
13 <Parameters_expect>0.001</Parameters_expect>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
14 <Parameters_sc-match>1</Parameters_sc-match>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
15 <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
16 <Parameters_gap-open>5</Parameters_gap-open>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
17 <Parameters_gap-extend>2</Parameters_gap-extend>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
18 <Parameters_filter>L;m;</Parameters_filter>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
19 </Parameters>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
20 </BlastOutput_param>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
21 <BlastOutput_iterations>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
22 <Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
23 <Iteration_iter-num>1</Iteration_iter-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
24 <Iteration_query-ID>Query_1</Iteration_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
25 <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
26 <Iteration_query-len>20</Iteration_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
27 <Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
28 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
29 <Hit_num>1</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
30 <Hit_id>gnl|BL_ORD_ID|5</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
31 <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
32 <Hit_accession>5</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
33 <Hit_len>2457</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
34 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
35 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
36 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
37 <Hsp_bit-score>40.14</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
38 <Hsp_score>20</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
39 <Hsp_evalue>1.51296e-07</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
40 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
41 <Hsp_query-to>20</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
42 <Hsp_hit-from>2119</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
43 <Hsp_hit-to>2138</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
44 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
45 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
46 <Hsp_identity>20</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
47 <Hsp_positive>20</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
48 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
49 <Hsp_align-len>20</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
50 <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
51 <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
52 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
53 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
54 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
55 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
56 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
57 <Hit_num>2</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
58 <Hit_id>gnl|BL_ORD_ID|2</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
59 <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
60 <Hit_accession>2</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
61 <Hit_len>323</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
62 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
63 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
64 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
65 <Hsp_bit-score>40.14</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
66 <Hsp_score>20</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
67 <Hsp_evalue>1.51296e-07</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
68 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
69 <Hsp_query-to>20</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
70 <Hsp_hit-from>200</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
71 <Hsp_hit-to>219</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
72 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
73 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
74 <Hsp_identity>20</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
75 <Hsp_positive>20</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
76 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
77 <Hsp_align-len>20</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
78 <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
79 <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
80 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
81 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
82 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
83 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
84 </Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
85 <Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
86 <Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
87 <Statistics_db-num>8</Statistics_db-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
88 <Statistics_db-len>15339</Statistics_db-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
89 <Statistics_hsp-len>8</Statistics_hsp-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
90 <Statistics_eff-space>183300</Statistics_eff-space>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
91 <Statistics_kappa>0.710602795216363</Statistics_kappa>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
92 <Statistics_lambda>1.37406312246009</Statistics_lambda>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
93 <Statistics_entropy>1.30724660390929</Statistics_entropy>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
94 </Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
95 </Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
96 </Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
97 <Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
98 <Iteration_iter-num>2</Iteration_iter-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
99 <Iteration_query-ID>Query_2</Iteration_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
100 <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
101 <Iteration_query-len>20</Iteration_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
102 <Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
103 </Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
104 <Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
105 <Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
106 <Statistics_db-num>8</Statistics_db-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
107 <Statistics_db-len>15339</Statistics_db-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
108 <Statistics_hsp-len>8</Statistics_hsp-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
109 <Statistics_eff-space>183300</Statistics_eff-space>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
110 <Statistics_kappa>0.710602795216363</Statistics_kappa>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
111 <Statistics_lambda>1.37406312246009</Statistics_lambda>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
112 <Statistics_entropy>1.30724660390929</Statistics_entropy>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
113 </Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
114 </Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
115 <Iteration_message>No hits found</Iteration_message>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
116 </Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
117 <Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
118 <Iteration_iter-num>3</Iteration_iter-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
119 <Iteration_query-ID>Query_3</Iteration_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
120 <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
121 <Iteration_query-len>20</Iteration_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
122 <Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
123 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
124 <Hit_num>1</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
125 <Hit_id>gnl|BL_ORD_ID|5</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
126 <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
127 <Hit_accession>5</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
128 <Hit_len>2457</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
129 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
130 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
131 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
132 <Hsp_bit-score>40.14</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
133 <Hsp_score>20</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
134 <Hsp_evalue>1.51296e-07</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
135 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
136 <Hsp_query-to>20</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
137 <Hsp_hit-from>2143</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
138 <Hsp_hit-to>2162</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
139 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
140 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
141 <Hsp_identity>20</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
142 <Hsp_positive>20</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
143 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
144 <Hsp_align-len>20</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
145 <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
146 <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
147 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
148 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
149 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
150 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
151 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
152 <Hit_num>2</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
153 <Hit_id>gnl|BL_ORD_ID|2</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
154 <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
155 <Hit_accession>2</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
156 <Hit_len>323</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
157 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
158 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
159 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
160 <Hsp_bit-score>40.14</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
161 <Hsp_score>20</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
162 <Hsp_evalue>1.51296e-07</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
163 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
164 <Hsp_query-to>20</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
165 <Hsp_hit-from>224</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
166 <Hsp_hit-to>243</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
167 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
168 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
169 <Hsp_identity>20</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
170 <Hsp_positive>20</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
171 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
172 <Hsp_align-len>20</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
173 <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
174 <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
175 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
176 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
177 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
178 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
179 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
180 <Hit_num>3</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
181 <Hit_id>gnl|BL_ORD_ID|1</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
182 <Hit_def>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&apos;UTR/plant_junction_region.|-9105899556052450000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
183 <Hit_accession>1</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
184 <Hit_len>1045</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
185 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
186 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
187 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
188 <Hsp_bit-score>34.1929</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
189 <Hsp_score>17</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
190 <Hsp_evalue>9.33411e-06</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
191 <Hsp_query-from>4</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
192 <Hsp_query-to>20</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
193 <Hsp_hit-from>2</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
194 <Hsp_hit-to>18</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
195 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
196 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
197 <Hsp_identity>17</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
198 <Hsp_positive>17</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
199 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
200 <Hsp_align-len>17</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
201 <Hsp_qseq>GCGCGGTGTCATCTATG</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
202 <Hsp_hseq>GCGCGGTGTCATCTATG</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
203 <Hsp_midline>|||||||||||||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
204 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
205 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
206 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
207 </Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
208 <Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
209 <Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
210 <Statistics_db-num>8</Statistics_db-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
211 <Statistics_db-len>15339</Statistics_db-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
212 <Statistics_hsp-len>8</Statistics_hsp-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
213 <Statistics_eff-space>183300</Statistics_eff-space>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
214 <Statistics_kappa>0.710602795216363</Statistics_kappa>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
215 <Statistics_lambda>1.37406312246009</Statistics_lambda>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
216 <Statistics_entropy>1.30724660390929</Statistics_entropy>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
217 </Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
218 </Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
219 </Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
220 <Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
221 <Iteration_iter-num>4</Iteration_iter-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
222 <Iteration_query-ID>Query_4</Iteration_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
223 <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
224 <Iteration_query-len>24</Iteration_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
225 <Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
226 </Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
227 <Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
228 <Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
229 <Statistics_db-num>8</Statistics_db-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
230 <Statistics_db-len>15339</Statistics_db-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
231 <Statistics_hsp-len>9</Statistics_hsp-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
232 <Statistics_eff-space>229005</Statistics_eff-space>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
233 <Statistics_kappa>0.710602795216363</Statistics_kappa>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
234 <Statistics_lambda>1.37406312246009</Statistics_lambda>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
235 <Statistics_entropy>1.30724660390929</Statistics_entropy>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
236 </Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
237 </Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
238 <Iteration_message>No hits found</Iteration_message>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
239 </Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
240 <Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
241 <Iteration_iter-num>5</Iteration_iter-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
242 <Iteration_query-ID>Query_5</Iteration_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
243 <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
244 <Iteration_query-len>20</Iteration_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
245 <Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
246 </Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
247 <Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
248 <Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
249 <Statistics_db-num>8</Statistics_db-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
250 <Statistics_db-len>15339</Statistics_db-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
251 <Statistics_hsp-len>8</Statistics_hsp-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
252 <Statistics_eff-space>183300</Statistics_eff-space>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
253 <Statistics_kappa>0.710602795216363</Statistics_kappa>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
254 <Statistics_lambda>1.37406312246009</Statistics_lambda>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
255 <Statistics_entropy>1.30724660390929</Statistics_entropy>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
256 </Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
257 </Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
258 <Iteration_message>No hits found</Iteration_message>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
259 </Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
260 <Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
261 <Iteration_iter-num>6</Iteration_iter-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
262 <Iteration_query-ID>Query_6</Iteration_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
263 <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
264 <Iteration_query-len>25</Iteration_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
265 <Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
266 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
267 <Hit_num>1</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
268 <Hit_id>gnl|BL_ORD_ID|7</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
269 <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
270 <Hit_accession>7</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
271 <Hit_len>4983</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
272 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
273 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
274 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
275 <Hsp_bit-score>36.1753</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
276 <Hsp_score>18</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
277 <Hsp_evalue>3.14801e-06</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
278 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
279 <Hsp_query-to>22</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
280 <Hsp_hit-from>2344</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
281 <Hsp_hit-to>2365</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
282 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
283 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
284 <Hsp_identity>21</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
285 <Hsp_positive>21</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
286 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
287 <Hsp_align-len>22</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
288 <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
289 <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
290 <Hsp_midline>|||||||||||||| |||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
291 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
292 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
293 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
294 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
295 <Hit_num>2</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
296 <Hit_id>gnl|BL_ORD_ID|6</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
297 <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
298 <Hit_accession>6</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
299 <Hit_len>4180</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
300 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
301 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
302 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
303 <Hsp_bit-score>36.1753</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
304 <Hsp_score>18</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
305 <Hsp_evalue>3.14801e-06</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
306 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
307 <Hsp_query-to>22</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
308 <Hsp_hit-from>1541</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
309 <Hsp_hit-to>1562</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
310 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
311 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
312 <Hsp_identity>21</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
313 <Hsp_positive>21</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
314 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
315 <Hsp_align-len>22</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
316 <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
317 <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
318 <Hsp_midline>|||||||||||||| |||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
319 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
320 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
321 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
322 </Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
323 <Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
324 <Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
325 <Statistics_db-num>8</Statistics_db-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
326 <Statistics_db-len>15339</Statistics_db-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
327 <Statistics_hsp-len>9</Statistics_hsp-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
328 <Statistics_eff-space>244272</Statistics_eff-space>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
329 <Statistics_kappa>0.710602795216363</Statistics_kappa>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
330 <Statistics_lambda>1.37406312246009</Statistics_lambda>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
331 <Statistics_entropy>1.30724660390929</Statistics_entropy>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
332 </Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
333 </Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
334 </Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
335 <Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
336 <Iteration_iter-num>7</Iteration_iter-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
337 <Iteration_query-ID>Query_7</Iteration_query-ID>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
338 <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
339 <Iteration_query-len>74</Iteration_query-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
340 <Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
341 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
342 <Hit_num>1</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
343 <Hit_id>gnl|BL_ORD_ID|7</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
344 <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
345 <Hit_accession>7</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
346 <Hit_len>4983</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
347 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
348 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
349 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
350 <Hsp_bit-score>67.8929</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
351 <Hsp_score>34</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
352 <Hsp_evalue>3.56369e-15</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
353 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
354 <Hsp_query-to>74</Hsp_query-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
355 <Hsp_hit-from>2319</Hsp_hit-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
356 <Hsp_hit-to>2392</Hsp_hit-to>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
357 <Hsp_query-frame>1</Hsp_query-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
358 <Hsp_hit-frame>1</Hsp_hit-frame>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
359 <Hsp_identity>64</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
360 <Hsp_positive>64</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
361 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
362 <Hsp_align-len>74</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
363 <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
364 <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
365 <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
366 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
367 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
368 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
369 <Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
370 <Hit_num>2</Hit_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
371 <Hit_id>gnl|BL_ORD_ID|6</Hit_id>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
372 <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
373 <Hit_accession>6</Hit_accession>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
374 <Hit_len>4180</Hit_len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
375 <Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
376 <Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
377 <Hsp_num>1</Hsp_num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
378 <Hsp_bit-score>67.8929</Hsp_bit-score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
379 <Hsp_score>34</Hsp_score>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
380 <Hsp_evalue>3.56369e-15</Hsp_evalue>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
381 <Hsp_query-from>1</Hsp_query-from>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
382 <Hsp_query-to>74</Hsp_query-to>
70
0ef071bba164 Modify test data to include a negative frame sequence that is split in multiple lines
Jan Kanis <jan.code@jankanis.nl>
parents: 32
diff changeset
383 <Hsp_hit-from>1589</Hsp_hit-from>
0ef071bba164 Modify test data to include a negative frame sequence that is split in multiple lines
Jan Kanis <jan.code@jankanis.nl>
parents: 32
diff changeset
384 <Hsp_hit-to>1516</Hsp_hit-to>
25
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
385 <Hsp_query-frame>1</Hsp_query-frame>
70
0ef071bba164 Modify test data to include a negative frame sequence that is split in multiple lines
Jan Kanis <jan.code@jankanis.nl>
parents: 32
diff changeset
386 <Hsp_hit-frame>-1</Hsp_hit-frame>
25
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
387 <Hsp_identity>64</Hsp_identity>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
388 <Hsp_positive>64</Hsp_positive>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
389 <Hsp_gaps>0</Hsp_gaps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
390 <Hsp_align-len>74</Hsp_align-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
391 <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
392 <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
393 <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
394 </Hsp>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
395 </Hit_hsps>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
396 </Hit>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
397 </Iteration_hits>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
398 <Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
399 <Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
400 <Statistics_db-num>8</Statistics_db-num>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
401 <Statistics_db-len>15339</Statistics_db-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
402 <Statistics_hsp-len>10</Statistics_hsp-len>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
403 <Statistics_eff-space>976576</Statistics_eff-space>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
404 <Statistics_kappa>0.710602795216363</Statistics_kappa>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
405 <Statistics_lambda>1.37406312246009</Statistics_lambda>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
406 <Statistics_entropy>1.30724660390929</Statistics_entropy>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
407 </Statistics>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
408 </Iteration_stat>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
409 </Iteration>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
410 </BlastOutput_iterations>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
411 </BlastOutput>
b77934f57522 add more example xmls, move them to a subdirectory
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
412