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Nucleotide Blast results

Program:BLASTN 2.2.29+
Database:pdb

Nucleotide Sequence (16 letters)

Query number:1
Query ID:106397
Definition line:No definition line
Length:16

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments
Color key for alignment scores
<40
40–50
50–80
80–200
200≤
query:
2
4
6
8
10
12
14
16

Descriptions

Sequences producing significant alignments:
Description Max score Total score Query cover E value Ident Accession
32.2 77.3 100% 0.0007913 100% 3J5K_A
32.2 77.3 100% 0.0007913 100% 3J5I_A
32.2 77.3 100% 0.0007913 100% 3J5G_A
32.2 77.3 100% 0.0007913 100% 3J5E_A
32.2 77.3 100% 0.0007913 100% 3J5C_A
32.2 77.3 100% 0.0007913 100% 3J5A_A
32.2 77.3 100% 0.0007913 100% 3J58_A
32.2 77.3 100% 0.0007913 100% 3J56_A
32.2 77.3 100% 0.0007913 100% 3J54_A
32.2 77.3 100% 0.0007913 100% 3J52_A
32.2 77.3 100% 0.0007913 100% 3J51_A
32.2 77.3 100% 0.0007913 100% 3J50_A
32.2 77.3 100% 0.0007913 100% 3J4X_A
32.2 62.9 100% 0.0007913 100% 3J37_A
32.2 62.9 100% 0.0007913 100% 3IZT_B
32.2 77.3 100% 0.0007913 100% 3FIK_B
32.2 77.3 100% 0.0007913 100% 3E1B_B
32.2 77.3 100% 0.0007913 100% 2GYC_0
32.2 77.3 100% 0.0007913 100% 2GYA_0
32.2 77.3 100% 0.0007913 100% 2I2V_B
32.2 77.3 100% 0.0007913 100% 2AW4_B
32.2 77.3 100% 0.0007913 100% 2AWB_B
32.2 77.3 100% 0.0007913 100% 1VS6_B
32.2 77.3 100% 0.0007913 100% 1P85_0
26.3 40.6 81% 0.04882 100% 1C2W_B
18.3 36.7 81% 11.9 92% 3J44_1
18.3 36.7 81% 11.9 92% 3J2L_1
18.3 77.8 88% 11.9 100% 3J62_AA
18.3 18.3 56% 11.9 100% 4CE4_A
18.3 79.8 81% 11.9 100% 4BYP_5
18.3 79.8 81% 11.9 100% 4BYW_5
18.3 51.0 75% 11.9 100% 4HUB_0
18.3 128.8 100% 11.9 100% 3J3F_5
18.3 63.4 100% 11.9 100% 3J3E_5
18.3 32.7 81% 11.9 100% 3ZEX_B
18.3 32.7 56% 11.9 100% 3OW2_0
18.3 51.0 75% 11.9 100% 4ADX_0
18.3 47.1 88% 11.9 100% 3U5F_6
18.3 47.1 88% 11.9 100% 3U5B_2
18.3 51.0 75% 11.9 100% 4A1D_1
18.3 51.0 75% 11.9 100% 4A18_1
18.3 51.0 75% 11.9 100% 4A1B_1
18.3 18.3 56% 11.9 100% 3J0L_8
18.3 18.3 56% 11.9 100% 3J0O_8
18.3 79.8 81% 11.9 100% 3O58_1
18.3 79.8 81% 11.9 100% 3O5H_1
18.3 47.1 88% 11.9 100% 3O2Z_1
18.3 47.1 88% 11.9 100% 3O30_1
18.3 79.8 81% 11.9 100% 3IZF_A
18.3 47.1 88% 11.9 100% 3IZE_A
18.3 18.3 56% 11.9 100% 3KO2_I
18.3 18.3 56% 11.9 100% 3KO2_H
18.3 18.3 56% 11.9 100% 3KO2_D
18.3 18.3 56% 11.9 100% 3KO2_C
18.3 51.0 75% 11.9 100% 3I56_0
18.3 79.8 81% 11.9 100% 3JYX_5
18.3 47.1 88% 11.9 100% 3JYV_A
18.3 32.7 56% 11.9 100% 1S1I_3
18.3 32.7 56% 11.9 100% 2QEX_0
18.3 32.7 56% 11.9 100% 3CPW_0
18.3 51.0 75% 11.9 100% 3CCV_0
18.3 51.0 75% 11.9 100% 3CCU_0
18.3 51.0 75% 11.9 100% 3CCS_0
18.3 51.0 75% 11.9 100% 3CCR_0
18.3 51.0 75% 11.9 100% 3CCQ_0
18.3 36.7 75% 11.9 100% 3CCM_0
18.3 51.0 75% 11.9 100% 3CCL_0
18.3 51.0 75% 11.9 100% 3CCJ_0
18.3 51.0 75% 11.9 100% 3CCE_0
18.3 51.0 75% 11.9 100% 3CC7_0
18.3 51.0 75% 11.9 100% 3CC2_0
18.3 63.4 81% 11.9 100% 2ZKR_0
18.3 32.7 56% 11.9 100% 2QA4_0
18.3 18.3 56% 11.9 100% 2FTC_R
18.3 32.7 56% 11.9 100% 1S72_0
18.3 51.0 75% 11.9 100% 1YIT_0
18.3 51.0 75% 11.9 100% 1YHQ_0
18.3 51.0 75% 11.9 100% 1YJW_0
18.3 32.7 56% 11.9 100% 1Q86_A
18.3 32.7 56% 11.9 100% 1JJ2_0
18.3 32.7 56% 11.9 100% 1KC8_A
18.3 32.7 56% 11.9 100% 1FFK_0
18.3 32.7 56% 11.9 100% 1FG0_A
18.3 32.7 56% 11.9 100% 1FFZ_A
16.4 16.4 50% 47.03 100% 4LGT_F
16.4 16.4 50% 47.03 100% 4LGT_E
16.4 32.7 69% 47.03 100% 4BTD_A
16.4 32.7 69% 47.03 100% 4L6J_A
16.4 32.7 69% 47.03 100% 4KFI_A
16.4 32.7 69% 47.03 100% 4K0Q_A
16.4 32.7 69% 47.03 100% 4K0M_A
16.4 73.8 88% 47.03 100% 3J3V_A
16.4 73.8 88% 47.03 100% 3J3W_A
16.4 32.7 69% 47.03 100% 3V6X_A
16.4 32.7 69% 47.03 100% 3V6W_A
16.4 16.4 50% 47.03 100% 2YMI_DD
16.4 30.7 56% 47.03 100% 2YMF_A
16.4 32.7 69% 47.03 100% 2J01_A
16.4 16.4 50% 47.03 100% 4AQX_C
16.4 16.4 50% 47.03 100% 4AQU_C

Alignments

Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval Post-translocation Complex (post4, 50s Subunit)

Sequence ID: gi|557804730|pdb|3J5K|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3b, 50s Subunit)

Sequence ID: gi|557804675|pdb|3J5I|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3a, 50s Subunit)

Sequence ID: gi|557804619|pdb|3J5G|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2b, 50s Subunit)

Sequence ID: gi|557804563|pdb|3J5E|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2a, 50s Subunit)

Sequence ID: gi|557804507|pdb|3J5C|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)

Sequence ID: gi|557804451|pdb|3J5A|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)

Sequence ID: gi|557804395|pdb|3J58|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)

Sequence ID: gi|557804339|pdb|3J56|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)

Sequence ID: gi|557804283|pdb|3J54|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)

Sequence ID: gi|557804227|pdb|3J52|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)

Sequence ID: gi|557804195|pdb|3J51|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)

Sequence ID: gi|557804163|pdb|3J50|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)

Sequence ID: gi|557804083|pdb|3J4X|A Length: 2903 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain A, Tetracycline Resistance Protein Tet(o) Bound To The Ribosome

Sequence ID: gi|474452808|pdb|3J37|A Length: 2904 Number of Matches: 3

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845
Descriptions
Gene Bank

Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon.

Sequence ID: gi|326634210|pdb|3IZT|B Length: 2904 Number of Matches: 3

See 7 more title(s)

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845
Descriptions
Gene Bank

Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit.

Sequence ID: gi|224510767|pdb|3FIK|B Length: 2903 Number of Matches: 4

See 19 more title(s)

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State

Sequence ID: gi|256032374|pdb|3E1B|B Length: 2903 Number of Matches: 4

See 1 more title(s)

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain 0, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143

Sequence ID: gi|157883716|pdb|2GYC|0 Length: 2740 Number of Matches: 4

Range 1: 889 to 904

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    889  CGTCCGTCGTGAAGAG  904

Range 2: 2453 to 2460

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2453  CGTCGTGA  2460

Range 3: 776 to 782

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    776  TCGTGAA  782

Range 4: 1910 to 1916

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   1910  GTGAAGA  1916
Descriptions
Gene Bank

Chain 0, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056

Sequence ID: gi|157883710|pdb|2GYA|0 Length: 2740 Number of Matches: 4

Range 1: 889 to 904

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    889  CGTCCGTCGTGAAGAG  904

Range 2: 2453 to 2460

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2453  CGTCGTGA  2460

Range 3: 776 to 782

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    776  TCGTGAA  782

Range 4: 1910 to 1916

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   1910  GTGAAGA  1916
Descriptions
Gene Bank

Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

Sequence ID: gi|122922257|pdb|2I2V|B Length: 2904 Number of Matches: 4

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

Sequence ID: gi|83754062|pdb|2AW4|B Length: 2904 Number of Matches: 4

See 38 more title(s)

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

Sequence ID: gi|83754118|pdb|2AWB|B Length: 2904 Number of Matches: 4

See 2 more title(s)

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

Sequence ID: gi|157880571|pdb|1VS6|B Length: 2904 Number of Matches: 4

See 6 more title(s)

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome

Sequence ID: gi|33357900|pdb|1P85|0 Length: 2904 Number of Matches: 4

See 1 more title(s)

Range 1: 961 to 976

ScoreExpectIdentitiesGapsStrand
32.2 bits(16) 0.0 16/16(100%) 0/16(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAAGAG  16
                ||||||||||||||||
Subject    961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2591  CGTCGTGA  2598

Range 3: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845

Range 4: 2027 to 2033

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2027  GTGAAGA  2033
Descriptions
Gene Bank

Chain B, 23s Rrna Structure Fitted To A Cryo-Electron Microscopic Map At 7.5 Angstroms Resolution

Sequence ID: gi|7767146|pdb|1C2W|B Length: 2904 Number of Matches: 2

Range 1: 961 to 973

ScoreExpectIdentitiesGapsStrand
26.3 bits(13) 0.0 13/13(100%) 0/13(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAA  13
                |||||||||||||
Subject    961  CGTCCGTCGTGAA  973

Range 2: 839 to 845

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        7  TCGTGAA  13
                |||||||
Subject    839  TCGTGAA  845
Descriptions
Gene Bank

Chain 1, Structure Of The Methanococcus Jannaschii Ribosome-secyebeta Channel Complex (50s Ribosomal Subunit)

Sequence ID: gi|551701574|pdb|3J44|1 Length: 3049 Number of Matches: 2

Range 1: 651 to 663

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 12/13(92%) 0/13(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAA  13
                |||||||| ||||
Subject    651  CGTCCGTCTTGAA  663

Range 2: 2705 to 2713

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2705  CCGTCGTGA  2713
Descriptions
Gene Bank

Chain 1, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Rna)

Sequence ID: gi|428697991|pdb|3J2L|1 Length: 3049 Number of Matches: 2

Range 1: 651 to 663

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 12/13(92%) 0/13(0%) Plus/Plus 
Query        1  CGTCCGTCGTGAA  13
                |||||||| ||||
Subject    651  CGTCCGTCTTGAA  663

Range 2: 2705 to 2713

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2705  CCGTCGTGA  2713
Descriptions
Gene Bank

Chain a, Model Of The Large Subunit Rna Based On A 5.5 A Cryo-em Map Of Triticum Aestivum Translating 80s Ribosome

Sequence ID: gi|582044940|pdb|3J62|AA Length: 3391 Number of Matches: 5

Range 1: 2961 to 2969

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2961  CCGTCGTGA  2969

Range 2: 177 to 170

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        2  GTCCGTCG  9
                ||||||||
Subject    177  GTCCGTCG  170

Range 3: 553 to 559

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject    553  CCGTCGT  559

Range 4: 2048 to 2042

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Minus 
Query        2  GTCCGTC  8
                |||||||
Subject   2048  GTCCGTC  2042

Range 5: 2211 to 2217

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2211  GTGAAGA  2217
Descriptions
Gene Bank

Chain A, 39s Large Subunit Of The Porcine Mitochondrial Ribosome

Sequence ID: gi|567755268|pdb|4CE4|A Length: 1570 Number of Matches: 1

Range 1: 1020 to 1028

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        8  CGTGAAGAG  16
                |||||||||
Subject   1020  CGTGAAGAG  1028
Descriptions
Gene Bank

Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex

Sequence ID: gi|558704783|pdb|4BYP|5 Length: 3396 Number of Matches: 5

Range 1: 2959 to 2967

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2959  CCGTCGTGA  2967

Range 2: 1634 to 1627

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   1634  CGTGAAGA  1627

Range 3: 2435 to 2442

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2435  GTGAAGAG  2442

Range 4: 1100 to 1106

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject   1100  TGAAGAG  1106

Range 5: 2216 to 2222

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2216  GTGAAGA  2222
Descriptions
Gene Bank

Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex

Sequence ID: gi|558704825|pdb|4BYW|5 Length: 3396 Number of Matches: 5

Range 1: 2959 to 2967

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2959  CCGTCGTGA  2967

Range 2: 1634 to 1627

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   1634  CGTGAAGA  1627

Range 3: 2435 to 2442

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2435  GTGAAGAG  2442

Range 4: 1100 to 1106

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject   1100  TGAAGAG  1106

Range 5: 2216 to 2222

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2216  GTGAAGA  2222
Descriptions
Gene Bank

Chain 0, The Re-refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution: More Complete Structure Of The L7/l12 And L1 Stalk, L5 And Lx Proteins

Sequence ID: gi|508123724|pdb|4HUB|0 Length: 2910 Number of Matches: 3

Range 1: 298 to 290

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    298  TCGTGAAGA  290

Range 2: 2618 to 2626

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2618  CCGTCGTGA  2626

Range 3: 2599 to 2605

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2599  GTCGTGA  2605
Descriptions
Gene Bank

Chain 5, Structure Of The H. Sapiens 60s Rrna

Sequence ID: gi|485601478|pdb|3J3F|5 Length: 5070 Number of Matches: 8

Range 1: 4536 to 4544

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   4536  CCGTCGTGA  4544

Range 2: 765 to 772

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        1  CGTCCGTC  8
                ||||||||
Subject    765  CGTCCGTC  772

Range 3: 769 to 776

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        1  CGTCCGTC  8
                ||||||||
Subject    769  CGTCCGTC  776

Range 4: 773 to 780

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        1  CGTCCGTC  8
                ||||||||
Subject    773  CGTCCGTC  780

Range 5: 777 to 784

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        1  CGTCCGTC  8
                ||||||||
Subject    777  CGTCCGTC  784

Range 6: 3939 to 3946

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   3939  GTGAAGAG  3946

Range 7: 393 to 399

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject    393  TGAAGAG  399

Range 8: 3720 to 3726

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   3720  GTGAAGA  3726
Descriptions
Gene Bank

Chain 5, Structure Of The D. Melanogaster 60s Rrna

Sequence ID: gi|485601474|pdb|3J3E|5 Length: 3970 Number of Matches: 4

Range 1: 3490 to 3498

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   3490  CCGTCGTGA  3498

Range 2: 2177 to 2184

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2177  GTGAAGAG  2184

Range 3: 2594 to 2600

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2594  GTGAAGA  2600

Range 4: 3627 to 3633

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        1  CGTCCGT  7
                |||||||
Subject   3627  CGTCCGT  3633
Descriptions
Gene Bank

Chain B, High_resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome

Sequence ID: gi|449802187|pdb|3ZEX|B Length: 1465 Number of Matches: 2

Range 1: 1334 to 1342

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   1334  CCGTCGTGA  1342

Range 2: 705 to 711

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject    705  TGAAGAG  711
Descriptions
Gene Bank

Chain 0, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit

Sequence ID: gi|392311504|pdb|3OW2|0 Length: 2902 Number of Matches: 2

Range 1: 2613 to 2621

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2613  CCGTCGTGA  2621

Range 2: 2594 to 2600

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2594  GTCGTGA  2600
Descriptions
Gene Bank

Chain 0, The Cryo-em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6

Sequence ID: gi|374977932|pdb|4ADX|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 6, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome B

Sequence ID: gi|364506133|pdb|3U5F|6 Length: 1800 Number of Matches: 3

Range 1: 1528 to 1536

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        3  TCCGTCGTG  11
                |||||||||
Subject   1528  TCCGTCGTG  1536

Range 2: 1006 to 1012

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject   1006  CCGTCGT  1012

Range 3: 1569 to 1563

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Minus 
Query       10  TGAAGAG  16
                |||||||
Subject   1569  TGAAGAG  1563
Descriptions
Gene Bank

Chain 2, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome A

Sequence ID: gi|364506095|pdb|3U5B|2 Length: 1800 Number of Matches: 3

See 2 more title(s)

Range 1: 1528 to 1536

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        3  TCCGTCGTG  11
                |||||||||
Subject   1528  TCCGTCGTG  1536

Range 2: 1006 to 1012

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject   1006  CCGTCGT  1012

Range 3: 1569 to 1563

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Minus 
Query       10  TGAAGAG  16
                |||||||
Subject   1569  TGAAGAG  1563
Descriptions
Gene Bank

Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 4.

Sequence ID: gi|358440203|pdb|4A1D|1 Length: 3119 Number of Matches: 3

Range 1: 2280 to 2288

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject   2280  TCGTGAAGA  2288

Range 2: 2714 to 2722

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2714  CCGTCGTGA  2722

Range 3: 2838 to 2844

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        8  CGTGAAG  14
                |||||||
Subject   2838  CGTGAAG  2844
Descriptions
Gene Bank

Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1

Sequence ID: gi|358440111|pdb|4A18|1 Length: 3354 Number of Matches: 3

Range 1: 2513 to 2521

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject   2513  TCGTGAAGA  2521

Range 2: 2947 to 2955

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2947  CCGTCGTGA  2955

Range 3: 3071 to 3077

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        8  CGTGAAG  14
                |||||||
Subject   3071  CGTGAAG  3077
Descriptions
Gene Bank

Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 3.

Sequence ID: gi|358440157|pdb|4A1B|1 Length: 3354 Number of Matches: 3

See 1 more title(s)

Range 1: 2513 to 2521

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject   2513  TCGTGAAGA  2521

Range 2: 2947 to 2955

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2947  CCGTCGTGA  2955

Range 3: 3071 to 3077

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        8  CGTGAAG  14
                |||||||
Subject   3071  CGTGAAG  3077
Descriptions
Gene Bank

Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1

Sequence ID: gi|357380452|pdb|3J0L|8 Length: 20 Number of Matches: 1

Range 1: 3 to 11

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject      3  CCGTCGTGA  11
Descriptions
Gene Bank

Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2

Sequence ID: gi|357380483|pdb|3J0O|8 Length: 20 Number of Matches: 1

Range 1: 3 to 11

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject      3  CCGTCGTGA  11
Descriptions
Gene Bank

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit.

Sequence ID: gi|315113523|pdb|3O58|1 Length: 3396 Number of Matches: 5

See 2 more title(s)

Range 1: 2959 to 2967

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2959  CCGTCGTGA  2967

Range 2: 1634 to 1627

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   1634  CGTGAAGA  1627

Range 3: 2435 to 2442

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2435  GTGAAGAG  2442

Range 4: 1100 to 1106

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject   1100  TGAAGAG  1106

Range 5: 2216 to 2222

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2216  GTGAAGA  2222
Descriptions
Gene Bank

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit.

Sequence ID: gi|315113568|pdb|3O5H|1 Length: 3396 Number of Matches: 5

See 2 more title(s)

Range 1: 2959 to 2967

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2959  CCGTCGTGA  2967

Range 2: 1634 to 1627

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   1634  CGTGAAGA  1627

Range 3: 2435 to 2442

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2435  GTGAAGAG  2442

Range 4: 1100 to 1106

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject   1100  TGAAGAG  1106

Range 5: 2216 to 2222

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2216  GTGAAGA  2222
Descriptions
Gene Bank

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The First 80s In The Asymmetric Unit.

Sequence ID: gi|315113447|pdb|3O2Z|1 Length: 1800 Number of Matches: 3

Range 1: 1528 to 1536

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        3  TCCGTCGTG  11
                |||||||||
Subject   1528  TCCGTCGTG  1536

Range 2: 1006 to 1012

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject   1006  CCGTCGT  1012

Range 3: 1569 to 1563

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Minus 
Query       10  TGAAGAG  16
                |||||||
Subject   1569  TGAAGAG  1563
Descriptions
Gene Bank

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The Second 80s In The Asymmetric Unit.

Sequence ID: gi|315113475|pdb|3O30|1 Length: 1800 Number of Matches: 3

Range 1: 1528 to 1536

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        3  TCCGTCGTG  11
                |||||||||
Subject   1528  TCCGTCGTG  1536

Range 2: 1006 to 1012

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject   1006  CCGTCGT  1012

Range 3: 1569 to 1563

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Minus 
Query       10  TGAAGAG  16
                |||||||
Subject   1569  TGAAGAG  1563
Descriptions
Gene Bank

Chain A, Model Of The Large Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome (With Es27l-In Conformation)

Sequence ID: gi|313103747|pdb|3IZF|A Length: 3396 Number of Matches: 5

Range 1: 2959 to 2967

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2959  CCGTCGTGA  2967

Range 2: 1634 to 1627

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   1634  CGTGAAGA  1627

Range 3: 2435 to 2442

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2435  GTGAAGAG  2442

Range 4: 1100 to 1106

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject   1100  TGAAGAG  1106

Range 5: 2216 to 2222

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2216  GTGAAGA  2222
Descriptions
Gene Bank

Chain A, Model Of The Small Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome

Sequence ID: gi|313103744|pdb|3IZE|A Length: 1800 Number of Matches: 3

Range 1: 1528 to 1536

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        3  TCCGTCGTG  11
                |||||||||
Subject   1528  TCCGTCGTG  1536

Range 2: 1006 to 1012

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject   1006  CCGTCGT  1012

Range 3: 1569 to 1563

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Minus 
Query       10  TGAAGAG  16
                |||||||
Subject   1569  TGAAGAG  1563
Descriptions
Gene Bank

Chain I, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

Sequence ID: gi|296278448|pdb|3KO2|I Length: 24 Number of Matches: 1

Range 1: 19 to 11

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject     19  CCGTCGTGA  11
Descriptions
Gene Bank

Chain H, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

Sequence ID: gi|296278447|pdb|3KO2|H Length: 24 Number of Matches: 1

Range 1: 6 to 14

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject      6  CCGTCGTGA  14
Descriptions
Gene Bank

Chain D, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

Sequence ID: gi|296278444|pdb|3KO2|D Length: 24 Number of Matches: 1

Range 1: 19 to 11

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject     19  CCGTCGTGA  11
Descriptions
Gene Bank

Chain C, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

Sequence ID: gi|296278443|pdb|3KO2|C Length: 24 Number of Matches: 1

Range 1: 6 to 14

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject      6  CCGTCGTGA  14
Descriptions
Gene Bank

Chain 0, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit

Sequence ID: gi|290790096|pdb|3I56|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 5, Structure Of The 60s Rrna For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution

Sequence ID: gi|281500859|pdb|3JYX|5 Length: 3170 Number of Matches: 5

Range 1: 2740 to 2748

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2740  CCGTCGTGA  2748

Range 2: 1587 to 1580

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   1587  CGTGAAGA  1580

Range 3: 2222 to 2229

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2222  GTGAAGAG  2229

Range 4: 1344 to 1350

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   1344  GTCGTGA  1350

Range 5: 2003 to 2009

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2003  GTGAAGA  2009
Descriptions
Gene Bank

Chain A, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution

Sequence ID: gi|281500807|pdb|3JYV|A Length: 1761 Number of Matches: 3

Range 1: 1492 to 1500

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        3  TCCGTCGTG  11
                |||||||||
Subject   1492  TCCGTCGTG  1500

Range 2: 981 to 987

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject    981  CCGTCGT  987

Range 3: 1533 to 1527

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Minus 
Query       10  TGAAGAG  16
                |||||||
Subject   1533  TGAAGAG  1527
Descriptions
Gene Bank

Chain 3, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h.

Sequence ID: gi|259090425|pdb|1S1I|3 Length: 2999 Number of Matches: 2

Range 1: 2710 to 2718

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2710  CCGTCGTGA  2718

Range 2: 2691 to 2697

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2691  GTCGTGA  2697
Descriptions
Gene Bank

Chain 0, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit

Sequence ID: gi|208435493|pdb|2QEX|0 Length: 2772 Number of Matches: 2

Range 1: 2476 to 2484

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2476  CCGTCGTGA  2484

Range 2: 2457 to 2463

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2457  GTCGTGA  2463
Descriptions
Gene Bank

Chain 0, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

Sequence ID: gi|194368703|pdb|3CPW|0 Length: 2922 Number of Matches: 2

Range 1: 2624 to 2632

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2624  CCGTCGTGA  2632

Range 2: 2605 to 2611

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2605  GTCGTGA  2611
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a

Sequence ID: gi|188596372|pdb|3CCV|0 Length: 2923 Number of Matches: 3

See 1 more title(s)

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c

Sequence ID: gi|188596341|pdb|3CCU|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a

Sequence ID: gi|188596310|pdb|3CCS|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model.

Sequence ID: gi|188596279|pdb|3CCR|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u

Sequence ID: gi|188596248|pdb|3CCQ|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u

Sequence ID: gi|188596217|pdb|3CCM|0 Length: 2923 Number of Matches: 2

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model.

Sequence ID: gi|188596186|pdb|3CCL|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u

Sequence ID: gi|188596155|pdb|3CCJ|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a

Sequence ID: gi|188596124|pdb|3CCE|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u

Sequence ID: gi|188596093|pdb|3CC7|0 Length: 2923 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins

Sequence ID: gi|188596031|pdb|3CC2|0 Length: 2923 Number of Matches: 3

See 7 more title(s)

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map

Sequence ID: gi|187609272|pdb|2ZKR|0 Length: 2903 Number of Matches: 4

Range 1: 2623 to 2631

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2623  CCGTCGTGA  2631

Range 2: 2111 to 2118

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        9  GTGAAGAG  16
                ||||||||
Subject   2111  GTGAAGAG  2118

Range 3: 353 to 359

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject    353  TGAAGAG  359

Range 4: 1892 to 1898

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   1892  GTGAAGA  1898
Descriptions
Gene Bank

Chain 0, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit

Sequence ID: gi|171848835|pdb|2QA4|0 Length: 2922 Number of Matches: 2

Range 1: 2624 to 2632

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2624  CCGTCGTGA  2632

Range 2: 2605 to 2611

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2605  GTCGTGA  2611
Descriptions
Gene Bank

Chain R, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome

Sequence ID: gi|99032306|pdb|2FTC|R Length: 1568 Number of Matches: 1

Range 1: 1032 to 1040

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        8  CGTGAAGAG  16
                |||||||||
Subject   1032  CGTGAAGAG  1040
Descriptions
Gene Bank

Chain 0, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution

Sequence ID: gi|50513468|pdb|1S72|0 Length: 2922 Number of Matches: 2

See 14 more title(s)

Range 1: 2624 to 2632

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2624  CCGTCGTGA  2632

Range 2: 2605 to 2611

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2605  GTCGTGA  2611
Descriptions
Gene Bank

Chain 0, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui

Sequence ID: gi|66360881|pdb|1YIT|0 Length: 2922 Number of Matches: 3

See 1 more title(s)

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui

Sequence ID: gi|66360782|pdb|1YHQ|0 Length: 2922 Number of Matches: 3

See 3 more title(s)

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain 0, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui

Sequence ID: gi|66360980|pdb|1YJW|0 Length: 2922 Number of Matches: 3

Range 1: 305 to 297

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Minus 
Query        7  TCGTGAAGA  15
                |||||||||
Subject    305  TCGTGAAGA  297

Range 2: 2625 to 2633

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2625  CCGTCGTGA  2633

Range 3: 2606 to 2612

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2606  GTCGTGA  2612
Descriptions
Gene Bank

Chain A, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit.

Sequence ID: gi|37928006|pdb|1Q86|A Length: 2922 Number of Matches: 2

Range 1: 2624 to 2632

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2624  CCGTCGTGA  2632

Range 2: 2605 to 2611

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2605  GTCGTGA  2611
Descriptions
Gene Bank

Chain 0, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution

Sequence ID: gi|15825941|pdb|1JJ2|0 Length: 2922 Number of Matches: 2

See 16 more title(s)

Range 1: 2624 to 2632

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2624  CCGTCGTGA  2632

Range 2: 2605 to 2611

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2605  GTCGTGA  2611
Descriptions
Gene Bank

Chain A, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit

Sequence ID: gi|34811146|pdb|1KC8|A Length: 2922 Number of Matches: 2

Range 1: 2624 to 2632

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2624  CCGTCGTGA  2632

Range 2: 2605 to 2611

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2605  GTCGTGA  2611
Descriptions
Gene Bank

Chain 0, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution

Sequence ID: gi|10120918|pdb|1FFK|0 Length: 2922 Number of Matches: 2

Range 1: 2624 to 2632

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject   2624  CCGTCGTGA  2632

Range 2: 2605 to 2611

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject   2605  GTCGTGA  2611
Descriptions
Gene Bank

Chain A, Large Ribosomal Subunit Complexed With A 13 Bp Minihelix- Puromycin Compound

Sequence ID: gi|10120728|pdb|1FG0|A Length: 602 Number of Matches: 2

Range 1: 563 to 571

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject    563  CCGTCGTGA  571

Range 2: 544 to 550

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject    544  GTCGTGA  550
Descriptions
Gene Bank

Chain A, Large Ribosomal Subunit Complexed With R(Cc)-Da-Puromycin

Sequence ID: gi|10120727|pdb|1FFZ|A Length: 602 Number of Matches: 2

Range 1: 563 to 571

ScoreExpectIdentitiesGapsStrand
18.3 bits(9) 11.9 9/9(100%) 0/9(0%) Plus/Plus 
Query        4  CCGTCGTGA  12
                |||||||||
Subject    563  CCGTCGTGA  571

Range 2: 544 to 550

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        6  GTCGTGA  12
                |||||||
Subject    544  GTCGTGA  550
Descriptions
Gene Bank

Chain F, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate

Sequence ID: gi|558705015|pdb|4LGT|F Length: 21 Number of Matches: 1

Range 1: 5 to 12

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject      5  CGTCGTGA  12
Descriptions
Gene Bank

Chain E, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate

Sequence ID: gi|558705013|pdb|4LGT|E Length: 21 Number of Matches: 1

Range 1: 5 to 12

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject      5  CGTCGTGA  12
Descriptions
Gene Bank

Chain A, Thermus Thermophilus Ribosome

Sequence ID: gi|529280935|pdb|4BTD|A Length: 2915 Number of Matches: 2

Range 1: 2048 to 2055

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   2048  CGTGAAGA  2055

Range 2: 2603 to 2610

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2603  CGTCGTGA  2610
Descriptions
Gene Bank

Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The First 70s Ribosome.

Sequence ID: gi|528082310|pdb|4L6J|A Length: 2879 Number of Matches: 2

See 1 more title(s)

Range 1: 2021 to 2028

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   2021  CGTGAAGA  2028

Range 2: 2576 to 2583

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2576  CGTCGTGA  2583
Descriptions
Gene Bank

Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The A Subunit

Sequence ID: gi|520729408|pdb|4KFI|A Length: 2879 Number of Matches: 2

See 1 more title(s)

Range 1: 2021 to 2028

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   2021  CGTGAAGA  2028

Range 2: 2576 to 2583

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2576  CGTCGTGA  2583
Descriptions
Gene Bank

Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine

Sequence ID: gi|520728860|pdb|4K0Q|A Length: 2915 Number of Matches: 2

Range 1: 2048 to 2055

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   2048  CGTGAAGA  2055

Range 2: 2603 to 2610

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2603  CGTCGTGA  2610
Descriptions
Gene Bank

Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine

Sequence ID: gi|520728802|pdb|4K0M|A Length: 2915 Number of Matches: 2

Range 1: 2048 to 2055

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   2048  CGTGAAGA  2055

Range 2: 2603 to 2610

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2603  CGTCGTGA  2610
Descriptions
Gene Bank

Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state I-a)

Sequence ID: gi|512125286|pdb|3J3V|A Length: 2927 Number of Matches: 5

Range 1: 2620 to 2627

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2620  CGTCGTGA  2627

Range 2: 340 to 346

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject    340  TGAAGAG  346

Range 3: 440 to 446

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        3  TCCGTCG  9
                |||||||
Subject    440  TCCGTCG  446

Range 4: 2056 to 2062

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2056  GTGAAGA  2062

Range 5: 2644 to 2650

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        3  TCCGTCG  9
                |||||||
Subject   2644  TCCGTCG  2650
Descriptions
Gene Bank

Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state Ii-a)

Sequence ID: gi|512125306|pdb|3J3W|A Length: 2927 Number of Matches: 5

Range 1: 2620 to 2627

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2620  CGTCGTGA  2627

Range 2: 340 to 346

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query       10  TGAAGAG  16
                |||||||
Subject    340  TGAAGAG  346

Range 3: 440 to 446

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        3  TCCGTCG  9
                |||||||
Subject    440  TCCGTCG  446

Range 4: 2056 to 2062

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        9  GTGAAGA  15
                |||||||
Subject   2056  GTGAAGA  2062

Range 5: 2644 to 2650

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        3  TCCGTCG  9
                |||||||
Subject   2644  TCCGTCG  2650
Descriptions
Gene Bank

Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit

Sequence ID: gi|482676744|pdb|3V6X|A Length: 2916 Number of Matches: 2

Range 1: 2048 to 2055

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   2048  CGTGAAGA  2055

Range 2: 2603 to 2610

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2603  CGTCGTGA  2610
Descriptions
Gene Bank

Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit

Sequence ID: gi|482676712|pdb|3V6W|A Length: 2916 Number of Matches: 2

Range 1: 2048 to 2055

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   2048  CGTGAAGA  2055

Range 2: 2603 to 2610

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2603  CGTCGTGA  2610
Descriptions
Gene Bank

Chain d, The Cryo-Em Structure Of A 3d Dna-Origami Object

Sequence ID: gi|428697829|pdb|2YMI|DD Length: 56 Number of Matches: 1

Range 1: 52 to 45

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Minus 
Query        5  CGTCGTGA  12
                ||||||||
Subject     52  CGTCGTGA  45
Descriptions
Gene Bank

Chain A, The Cryo-Em Structure Of A 3d Dna-Origami Object

Sequence ID: gi|428697789|pdb|2YMF|A Length: 4896 Number of Matches: 2

Range 1: 575 to 582

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject    575  CGTCGTGA  582

Range 2: 561 to 567

ScoreExpectIdentitiesGapsStrand
14.4 bits(7) 185.8 7/7(100%) 0/7(0%) Plus/Plus 
Query        4  CCGTCGT  10
                |||||||
Subject    561  CCGTCGT  567
Descriptions
Gene Bank

Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I.

Sequence ID: gi|396639330|pdb|2J01|A Length: 2787 Number of Matches: 2

See 1 more title(s)

Range 1: 1948 to 1955

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        8  CGTGAAGA  15
                ||||||||
Subject   1948  CGTGAAGA  1955

Range 2: 2474 to 2481

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject   2474  CGTCGTGA  2481
Descriptions
Gene Bank

Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Magnesium

Sequence ID: gi|393715375|pdb|4AQX|C Length: 14 Number of Matches: 1

Range 1: 7 to 14

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject      7  CGTCGTGA  14
Descriptions
Gene Bank

Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Calcium

Sequence ID: gi|393715371|pdb|4AQU|C Length: 24 Number of Matches: 1

Range 1: 7 to 14

ScoreExpectIdentitiesGapsStrand
16.4 bits(8) 47.0 8/8(100%) 0/8(0%) Plus/Plus 
Query        5  CGTCGTGA  12
                ||||||||
Subject      7  CGTCGTGA  14