NCBI Blast:Nucleotide Sequence (16 letters)

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	7
Expect value	1000
Hitlist size	100
Match/Mismatch scores	1,-3
Gapcosts	5,2
Filter string	F
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Apr 29, 2014 3:14 AM
Number of letters	885,284
Number of sequences	8,975
Entrez query	none

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.37406	1.37406
K	0.710603	0.710603
H	1.30725	1.30725

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	11
Effective length of query	5
Effective length of database	786559
Effective search space	3932795
Effective search space used	3932795

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1Select seq pdb\|3J5A\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J5A_A
2Select seq pdb\|3J58\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J58_A
3Select seq pdb\|3J56\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J56_A
4Select seq pdb\|3J54\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J54_A
5Select seq pdb\|3J52\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J52_A
6Select seq pdb\|3J51\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J51_A
7Select seq pdb\|3J50\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J50_A
8Select seq pdb\|3J4X\|A	Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)	32.2	77.3	100%	8e-04	100%	3J4X_A
9Select seq pdb\|3J3F\|5	Chain 5, Structure Of The H. Sapiens 60s Rrna	18.3	128	100%	12	100%	3J3F_5
10Select seq pdb\|3J3E\|5	Chain 5, Structure Of The D. Melanogaster 60s Rrna	18.3	63.4	100%	12	100%	3J3E_5
11Select seq pdb\|3J0O\|8	Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2	18.3	18.3	56%	12	100%	3J0O_8

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Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)

Sequence ID: pdb|3J5A|ALength: 2903Number of Matches: 4

Related Information

Range 1: 961 to 976GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
32.2 bits(16)	8e-04()	16/16(100%)	0/16(0%)	Plus/Plus

Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
16.4 bits(8)	47()	8/8(100%)	0/8(0%)	Plus/Plus

Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598

Range 3: 839 to 845GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845

Range 4: 2027 to 2033GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033

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Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)

Sequence ID: pdb|3J58|ALength: 2903Number of Matches: 4

Related Information

Range 1: 961 to 976GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
32.2 bits(16)	8e-04()	16/16(100%)	0/16(0%)	Plus/Plus

Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
16.4 bits(8)	47()	8/8(100%)	0/8(0%)	Plus/Plus

Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598

Range 3: 839 to 845GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845

Range 4: 2027 to 2033GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033

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Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)

Sequence ID: pdb|3J56|ALength: 2903Number of Matches: 4

Related Information

Range 1: 961 to 976GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
32.2 bits(16)	8e-04()	16/16(100%)	0/16(0%)	Plus/Plus

Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
16.4 bits(8)	47()	8/8(100%)	0/8(0%)	Plus/Plus

Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598

Range 3: 839 to 845GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845

Range 4: 2027 to 2033GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033

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Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)

Sequence ID: pdb|3J54|ALength: 2903Number of Matches: 4

Related Information

Range 1: 961 to 976GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
32.2 bits(16)	8e-04()	16/16(100%)	0/16(0%)	Plus/Plus

Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
16.4 bits(8)	47()	8/8(100%)	0/8(0%)	Plus/Plus

Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598

Range 3: 839 to 845GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845

Range 4: 2027 to 2033GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033

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Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)

Sequence ID: pdb|3J52|ALength: 2903Number of Matches: 4

Related Information

Range 1: 961 to 976GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
32.2 bits(16)	8e-04()	16/16(100%)	0/16(0%)	Plus/Plus

Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976

Range 2: 2591 to 2598GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
16.4 bits(8)	47()	8/8(100%)	0/8(0%)	Plus/Plus

Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598

Range 3: 839 to 845GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845

Range 4: 2027 to 2033GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
14.4 bits(7)	186()	7/7(100%)	0/7(0%)	Plus/Plus

Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033

Nucleotide Sequence (16 letters)

Graphic Summary

Distribution of 45 Blast Hits on the Query Sequence [?]

Descriptions

Alignments