comparison blast2html.py @ 126:0fa962dd83b4

Add README and license

125:8205546ba86c

#!/usr/bin/env python3
# -*- coding: utf-8 -*-

# Actually this program works with both python 2 and 3, tested against python 2.6

# Copyright The Hyve B.V. 2014
# License: GPL version 3 or (at your option) any higher version

from __future__ import unicode_literals, division

import sys

    parser.add_argument('--db-config-dir',
                        help="""The directory where databases are configured in blastdb*.loc files. These files
                        are consulted for creating a gene bank link. The files should conform to the format that
                        Galaxy's BLAST expect, i.e. tab-separated tables (with lines starting with '#' ignored),
                        with two extra fields. The third field of a line should be a database path and the fourth
                        a genebank link template conforming to the --genelink-template option syntax. Entries in
                        these config files override links specified using --genelink-template and --dbname.""")
    
    args = parser.parse_args()
    if args.input == None:
        args.input = args.positional_arg
    if args.input == None:

126:0fa962dd83b4

#!/usr/bin/env python3
# -*- coding: utf-8 -*-

# Actually this program works with both python 2 and 3, tested against python 2.6

# Copyright The Hyve B.V. 2014-2015
# License: GPL version 3 or (at your option) any higher version

from __future__ import unicode_literals, division

import sys

    parser.add_argument('--db-config-dir',
                        help="""The directory where databases are configured in blastdb*.loc files. These files
                        are consulted for creating a gene bank link. The files should conform to the format that
                        Galaxy's BLAST expect, i.e. tab-separated tables (with lines starting with '#' ignored),
                        with two extra fields, for a total of five fields per line instead of three.. The third 
                        field of each line should be a database path as used by BLAST. The fourth field is the 
                        human readable database name, and the fifth a template link to the gene bank conforming
                        to the syntax for the --genelink-template option. Entries in these config files override 
                        links specified using --genelink-template and --dbname.""")
    
    args = parser.parse_args()
    if args.input == None:
        args.input = args.positional_arg
    if args.input == None: