Mercurial > repos > jankanis > blast2html
comparison tool_dependencies.xml @ 57:159989f6bfa6
depend on new python3; set LD_LIBRARY_PATH
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Mon, 26 May 2014 15:34:54 +0200 |
| parents | c0c4f52ca313 |
| children | 39df29f647e8 |
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| 56:d2fb88c1e866 | 57:159989f6bfa6 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="cython" version="0.20.1"> | |
| 4 <repository name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" | |
| 5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="c3a8c46fcb97" /> | |
| 6 </package> | |
| 7 | |
| 8 <package name="libxml2" version="2.9.1"> | 3 <package name="libxml2" version="2.9.1"> |
| 9 <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" | 4 <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" |
| 10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb" /> | 5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb" /> |
| 11 </package> | 6 </package> |
| 12 | 7 |
| 15 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" /> | 10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" /> |
| 16 </package> | 11 </package> |
| 17 | 12 |
| 18 <package name="python3" version="3.4.1"> | 13 <package name="python3" version="3.4.1"> |
| 19 <repository name="package_python3_4" owner="jankanis" prior_installation_required="True" | 14 <repository name="package_python3_4" owner="jankanis" prior_installation_required="True" |
| 20 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="9dbfc4fcef0a" /> | 15 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="59b33d253163" /> |
| 21 </package> | 16 </package> |
| 22 | 17 |
| 23 <package name="blast2html_venv" version="0.1"> | 18 <package name="blast2html_venv" version="0.1"> |
| 24 <install version="1.0"> | 19 <install version="1.0"> |
| 25 <actions> | 20 <actions> |
| 26 <action type="set_environment_for_install"> | 21 <action type="set_environment_for_install"> |
| 27 <repository name="package_cython_0_20_1" owner="iuc" | |
| 28 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="c3a8c46fcb97"> | |
| 29 <package name="cython" version="0.20.1" /> | |
| 30 </repository> | |
| 31 <repository name="package_libxml2_2_9_1" owner="devteam" | 22 <repository name="package_libxml2_2_9_1" owner="devteam" |
| 32 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb"> | 23 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb"> |
| 33 <package name="libxml2" version="2.9.1" /> | 24 <package name="libxml2" version="2.9.1" /> |
| 34 </repository> | 25 </repository> |
| 35 <repository name="package_libxslt_1_1_28" owner="devteam" | 26 <repository name="package_libxslt_1_1_28" owner="devteam" |
| 36 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee"> | 27 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee"> |
| 37 <package name="libxslt" version="1.1.28" /> | 28 <package name="libxslt" version="1.1.28" /> |
| 38 </repository> | 29 </repository> |
| 39 <repository name="package_python3_4" owner="jankanis" | 30 <repository name="package_python3_4" owner="jankanis" |
| 40 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="9dbfc4fcef0a"> | 31 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="59b33d253163"> |
| 41 <package name="python3" version="3.4.1" /> | 32 <package name="python3" version="3.4.1" /> |
| 42 </repository> | 33 </repository> |
| 43 </action> | 34 </action> |
| 44 | 35 |
| 45 <action type="shell_command"> | 36 <action type="shell_command"> |
| 52 pip3 install lxml jinja2 | 43 pip3 install lxml jinja2 |
| 53 </action> | 44 </action> |
| 54 | 45 |
| 55 <action type="set_environment"> | 46 <action type="set_environment"> |
| 56 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python3.4/site-packages</environment_variable> | 47 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python3.4/site-packages</environment_variable> |
| 48 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable> | |
| 57 </action> | 49 </action> |
| 58 </actions> | 50 </actions> |
| 59 </install> | 51 </install> |
| 60 <readme>A Python 3 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme> | 52 <readme>A Python 3 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme> |
| 61 </package> | 53 </package> |