comparison blast2html.py @ 122:5f104d05aa23

fix python 2.6 issue with array type codes

120:2729c2326235

        query_length = blastxml_len(result)

        for hit in hits(result):
            hsps = hit.Hit_hsps.Hsp

            cover = array('B', [0]) * query_length
            for hsp in hsps:
                cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array('B', [1]) * blastxml_len(hsp)
            cover_count = cover.count(1)

            best_hsp = max(hsps, key=lambda h: h['Hsp_bit-score'])

            yield dict(hit = hit,

122:5f104d05aa23

        query_length = blastxml_len(result)

        for hit in hits(result):
            hsps = hit.Hit_hsps.Hsp

            # In python 2.6 array doesn't accept unicode type codes, but in 3.4 it requires them
            cover = array(str('B'), [0]) * query_length
            for hsp in hsps:
                cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(str('B'), [1]) * blastxml_len(hsp)
            cover_count = cover.count(1)

            best_hsp = max(hsps, key=lambda h: h['Hsp_bit-score'])

            yield dict(hit = hit,