Mercurial > repos > jankanis > blast2html
comparison blast_html.py @ 15:648b3b7437da
minor update
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Mon, 12 May 2014 17:33:08 +0200 |
| parents | 0b33898bba45 |
| children | db7e4ee3be03 |
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| 14:0b33898bba45 | 15:648b3b7437da |
|---|---|
| 69 return hit.Hit_id.text.split('|', 2)[2] | 69 return hit.Hit_id.text.split('|', 2)[2] |
| 70 | 70 |
| 71 @filter | 71 @filter |
| 72 def alignment_pre(hsp): | 72 def alignment_pre(hsp): |
| 73 return ( | 73 return ( |
| 74 "Query {:>7s} {} {}\n".format(hsp['Hsp_query-from'].text, hsp.Hsp_qseq, hsp['Hsp_query-to'].text) + | 74 "Query {:>7s} {} {}\n".format(hsp['Hsp_query-from'].text, hsp.Hsp_qseq, hsp['Hsp_query-to']) + |
| 75 " {:7s} {}\n".format('', hsp.Hsp_midline) + | 75 " {:7s} {}\n".format('', hsp.Hsp_midline) + |
| 76 "Subject{:>7s} {} {}".format(hsp['Hsp_hit-from'].text, hsp.Hsp_hseq, hsp['Hsp_hit-to'].text) | 76 "Subject{:>7s} {} {}".format(hsp['Hsp_hit-from'].text, hsp.Hsp_hseq, hsp['Hsp_hit-to']) |
| 77 ) | 77 ) |
| 78 | 78 |
| 79 @filter('len') | 79 @filter('len') |
| 80 def hsplen(node): | 80 def hsplen(node): |
| 81 return int(node['Hsp_align-len']) | 81 return int(node['Hsp_align-len']) |