Mercurial > repos > jankanis > blast2html
comparison tool_dependencies.xml @ 62:b90441d0fe7d
Undo including $ENV[PYTHONPATH] in PYTHONPATH
If $ENV[PYTHONPATH] is empty, Galaxy replaces it with $PYTHONPATH instead of an empty string, which introduces
python 2 code in the python 3 path.
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Wed, 28 May 2014 14:02:38 +0200 |
| parents | cd31e2fb5f22 |
| children | fb823a59918f |
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| 61:c1dba49b72ef | 62:b90441d0fe7d |
|---|---|
| 42 blast2html_venv/bin/pip3 install lxml jinja2 | 42 blast2html_venv/bin/pip3 install lxml jinja2 |
| 43 </action> | 43 </action> |
| 44 | 44 |
| 45 <action type="set_environment"> | 45 <action type="set_environment"> |
| 46 <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment --> | 46 <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment --> |
| 47 <environment_variable name="PYTHONPATH" action="set_to">$INSTALL_DIR/blast2html_venv/lib/python3.4/site-packages:$ENV[PYTHONPATH]</environment_variable> | 47 <environment_variable name="PYTHONPATH" action="set_to">$INSTALL_DIR/blast2html_venv/lib/python3.4/site-packages</environment_variable> |
| 48 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/blast2html_venv/bin</environment_variable> | 48 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/blast2html_venv/bin</environment_variable> |
| 49 <environment_variable name="PYTHONHOME" action="set_to"></environment_variable> | 49 <environment_variable name="PYTHONHOME" action="set_to"></environment_variable> |
| 50 <!-- To find shared libraries such as libssl or libxml2 --> | 50 <!-- To find shared libraries such as libssl or libxml2 --> |
| 51 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable> | 51 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable> |
| 52 </action> | 52 </action> |