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comparison test-data/blast xml example4.html @ 32:ce8f29efc0a1

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fix tests
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 17:22:02 +0200
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children 3bb5da68305e
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31:344cd76f6fd2 32:ce8f29efc0a1
1 <!DOCTYPE html>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <meta name=generator content="blast2html; see ...">
6
7 <title>Blast output</title>
8
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359
360 <script type="text/javascript">
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364 e.style.display = 'block';
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369
370 </head>
371
372
373 <body>
374
375 <div id="strip_html_warning">
376 <!-- This div should be hidden by the header css block. Galaxy
377 strips all css, breaking this page but making this warning
378 visible. This warning contains some ugly old skool tabular html
379 layout that is not stripped. -->
380 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
381 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
382 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
383 </b></font></td></tr></table>
384 </div>
385
386 <div id=content>
387
388
389 <section class=index>
390 <h1>Queries</h1>
391
392 <div class=indexentry><a href="#match1">
393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
394 (20 letters, 2 hits)
395 </a></div>
396 <div class=indexentry><a href="#match2">
397 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
398 (20 letters, 0 hits)
399 </a></div>
400 <div class=indexentry><a href="#match3">
401 Query_3: Probe|NOST-Spec_(Genetic_ID)
402 (20 letters, 3 hits)
403 </a></div>
404 <div class=indexentry><a href="#match4">
405 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
406 (24 letters, 0 hits)
407 </a></div>
408 <div class=indexentry><a href="#match5">
409 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
410 (20 letters, 0 hits)
411 </a></div>
412 <div class=indexentry><a href="#match6">
413 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
414 (25 letters, 2 hits)
415 </a></div>
416 <div class=indexentry><a href="#match7">
417 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
418 (74 letters, 2 hits)
419 </a></div>
420
421 </section>
422
423
424 <section class=match id=match1>
425
426 <h1>Nucleotide Sequence (20 letters)</h1>
427
428 <section class=header>
429
430 <table class=headerdata>
431 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
432 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
433 <tr><td class=param>Query length:</td><td>20</td></tr>
434 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
435 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
436 </table>
437
438 </section>
439
440
441 <section class=graphics>
442 <h2>Graphic Summary</h2>
443
444 <div class=grey>
445 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
446
447 <div class=defline id=defline1>
448 Mouse-over to show defline and scores, click to show alignments
449 </div>
450
451 <div class=graphic>
452 <h4 class=darkHeader>Color key for alignment scores</h4>
453 <div class=legend><div class=graphicrow>
454 <div class=graphicitem style="background-color: black">&lt;40</div>
455 <div class=graphicitem style="background-color: blue">40–50</div>
456 <div class=graphicitem style="background-color: green">50–80</div>
457 <div class=graphicitem style="background-color: magenta">80–200</div>
458 <div class=graphicitem style="background-color: red">200≤</div>
459 </div></div>
460 <div style="clear: left"></div>
461
462 <div class=tablewrapper>
463
464 <div class=scale>
465 <div>query:</div>
466 <div class=graphicrow>
467 <div>
468 <div class=graphicitem style="width: 10.0%">
469 <div>2</div>
470 </div>
471 <div class=graphicitem style="width: 10.0%">
472 <div>4</div>
473 </div>
474 <div class=graphicitem style="width: 10.0%">
475 <div>6</div>
476 </div>
477 <div class=graphicitem style="width: 10.0%">
478 <div>8</div>
479 </div>
480 <div class=graphicitem style="width: 10.0%">
481 <div>10</div>
482 </div>
483 <div class=graphicitem style="width: 10.0%">
484 <div>12</div>
485 </div>
486 <div class=graphicitem style="width: 10.0%">
487 <div>14</div>
488 </div>
489 <div class=graphicitem style="width: 10.0%">
490 <div>16</div>
491 </div>
492 <div class=graphicitem style="width: 10.0%">
493 <div>18</div>
494 </div>
495 <div class=graphicitem style="width: 10.0%">
496 <div>20</div>
497 </div>
498 </div>
499 </div>
500 <div style="clear: left"></div>
501 </div>
502
503 <a class=matchresult
504 href="#hit1"
505 onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
506 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
507 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
508 <div class="matchrow graphicrow">
509 <div class="matchitem graphicitem"
510 style="background-color: black; width: 100.0%"></div>
511 </div>
512 </a>
513
514 <a class=matchresult
515 href="#hit2"
516 onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
517 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
518 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
519 <div class="matchrow graphicrow">
520 <div class="matchitem graphicitem"
521 style="background-color: black; width: 100.0%"></div>
522 </div>
523 </a>
524
525 </div>
526 </div>
527 </div>
528 </section>
529
530
531
532 <section class=descriptions>
533 <h2>Descriptions</h2>
534
535 <div class=grey><div class=white>
536 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
537
538 <table class=descriptiontable>
539 <col/><col/><col/><col/><col/><col/><col/>
540 <tr>
541 <th>Description</th>
542 <th>Max score</th>
543 <th>Total score</th>
544 <th>Query cover</th>
545 <th>E value</th>
546 <th>Ident</th>
547 <th>Accession</th>
548 </tr>
549 <tr>
550 <td><div><a href="#hit1"
551 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
552 id="description1">
553 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
554 </a></div></td>
555 <td>40.1</td>
556 <td>40.1</td>
557 <td>100%</td>
558 <td>1.513e-07</td>
559 <td>100%</td>
560 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a></td>
561 </tr>
562 <tr>
563 <td><div><a href="#hit2"
564 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
565 id="description2">
566 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
567 </a></div></td>
568 <td>40.1</td>
569 <td>40.1</td>
570 <td>100%</td>
571 <td>1.513e-07</td>
572 <td>100%</td>
573 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a></td>
574 </tr>
575 </table>
576
577 </div></div>
578 </section>
579
580
581
582 <section class=alignments>
583 <h2>Alignments</h2>
584
585 <div class=grey><div class=white>
586 <div class=alignment id=hit1>
587
588 <div class=linkheader>
589 <div class=right><a href="#description1">Descriptions</a></div>
590 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
591 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
592 </div>
593
594 <div class=title>
595 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
596 <p class=titleinfo>
597 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a>
598 <span class=b>Length:</span> 2457
599 <span class=b>Number of Matches:</span> 1
600 </p>
601 </div>
602
603
604 <div class=hotspot>
605 <p class=range>
606 <span class=range>Range 1: 2119 to 2138</span>
607 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2119&amp;to=2138">GenBank</a>
608 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2119&amp;to=2138">Graphics</a>
609 </p>
610
611 <table class=hotspotstable>
612 <tr>
613 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
614 </tr>
615 <tr>
616 <td>40.1 bits(20)</td>
617 <td>0.0</td>
618 <td>20/20(100%)</td>
619 <td>0/20(0%)</td>
620 <td>Plus/Plus</td>
621 </tr>
622 </table>
623
624 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
625 ||||||||||||||||||||
626 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
627 </div>
628
629 </div>
630
631 <div class=alignment id=hit2>
632
633 <div class=linkheader>
634 <div class=right><a href="#description2">Descriptions</a></div>
635 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
636 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
637 </div>
638
639 <div class=title>
640 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
641 <p class=titleinfo>
642 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a>
643 <span class=b>Length:</span> 323
644 <span class=b>Number of Matches:</span> 1
645 </p>
646 </div>
647
648
649 <div class=hotspot>
650 <p class=range>
651 <span class=range>Range 1: 200 to 219</span>
652 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=200&amp;to=219">GenBank</a>
653 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=200&amp;to=219">Graphics</a>
654 </p>
655
656 <table class=hotspotstable>
657 <tr>
658 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
659 </tr>
660 <tr>
661 <td>40.1 bits(20)</td>
662 <td>0.0</td>
663 <td>20/20(100%)</td>
664 <td>0/20(0%)</td>
665 <td>Plus/Plus</td>
666 </tr>
667 </table>
668
669 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
670 ||||||||||||||||||||
671 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
672 </div>
673
674 </div>
675
676 </div></div>
677 </section>
678 </section>
679
680 <section class=match id=match2>
681
682 <h1>Nucleotide Sequence (20 letters)</h1>
683
684 <section class=header>
685
686 <table class=headerdata>
687 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
688 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
689 <tr><td class=param>Query length:</td><td>20</td></tr>
690 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
691 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
692 </table>
693
694 </section>
695
696 <section>
697 <h2>No Hits</h2>
698 <div class=grey>
699 <table class=headerdata>
700 <tr><td class=param>Message:</td><td>No hits found</td></tr>
701 </table>
702 </div>
703 </section>
704 </section>
705
706 <section class=match id=match3>
707
708 <h1>Nucleotide Sequence (20 letters)</h1>
709
710 <section class=header>
711
712 <table class=headerdata>
713 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
714 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
715 <tr><td class=param>Query length:</td><td>20</td></tr>
716 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
717 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
718 </table>
719
720 </section>
721
722
723 <section class=graphics>
724 <h2>Graphic Summary</h2>
725
726 <div class=grey>
727 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
728
729 <div class=defline id=defline3>
730 Mouse-over to show defline and scores, click to show alignments
731 </div>
732
733 <div class=graphic>
734 <h4 class=darkHeader>Color key for alignment scores</h4>
735 <div class=legend><div class=graphicrow>
736 <div class=graphicitem style="background-color: black">&lt;40</div>
737 <div class=graphicitem style="background-color: blue">40–50</div>
738 <div class=graphicitem style="background-color: green">50–80</div>
739 <div class=graphicitem style="background-color: magenta">80–200</div>
740 <div class=graphicitem style="background-color: red">200≤</div>
741 </div></div>
742 <div style="clear: left"></div>
743
744 <div class=tablewrapper>
745
746 <div class=scale>
747 <div>query:</div>
748 <div class=graphicrow>
749 <div>
750 <div class=graphicitem style="width: 10.0%">
751 <div>2</div>
752 </div>
753 <div class=graphicitem style="width: 10.0%">
754 <div>4</div>
755 </div>
756 <div class=graphicitem style="width: 10.0%">
757 <div>6</div>
758 </div>
759 <div class=graphicitem style="width: 10.0%">
760 <div>8</div>
761 </div>
762 <div class=graphicitem style="width: 10.0%">
763 <div>10</div>
764 </div>
765 <div class=graphicitem style="width: 10.0%">
766 <div>12</div>
767 </div>
768 <div class=graphicitem style="width: 10.0%">
769 <div>14</div>
770 </div>
771 <div class=graphicitem style="width: 10.0%">
772 <div>16</div>
773 </div>
774 <div class=graphicitem style="width: 10.0%">
775 <div>18</div>
776 </div>
777 <div class=graphicitem style="width: 10.0%">
778 <div>20</div>
779 </div>
780 </div>
781 </div>
782 <div style="clear: left"></div>
783 </div>
784
785 <a class=matchresult
786 href="#hit1"
787 onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
788 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
789 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
790 <div class="matchrow graphicrow">
791 <div class="matchitem graphicitem"
792 style="background-color: black; width: 100.0%"></div>
793 </div>
794 </a>
795
796 <a class=matchresult
797 href="#hit2"
798 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
799 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
800 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
801 <div class="matchrow graphicrow">
802 <div class="matchitem graphicitem"
803 style="background-color: black; width: 100.0%"></div>
804 </div>
805 </a>
806
807 <a class=matchresult
808 href="#hit3"
809 onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
810 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
811 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000">
812 <div class="matchrow graphicrow">
813 <div class="matchitem graphicitem"
814 style="background-color: transparent; width: 15.0%"></div>
815 <div class="matchitem graphicitem"
816 style="background-color: black; width: 85.0%"></div>
817 </div>
818 </a>
819
820 </div>
821 </div>
822 </div>
823 </section>
824
825
826
827 <section class=descriptions>
828 <h2>Descriptions</h2>
829
830 <div class=grey><div class=white>
831 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
832
833 <table class=descriptiontable>
834 <col/><col/><col/><col/><col/><col/><col/>
835 <tr>
836 <th>Description</th>
837 <th>Max score</th>
838 <th>Total score</th>
839 <th>Query cover</th>
840 <th>E value</th>
841 <th>Ident</th>
842 <th>Accession</th>
843 </tr>
844 <tr>
845 <td><div><a href="#hit1"
846 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
847 id="description1">
848 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
849 </a></div></td>
850 <td>40.1</td>
851 <td>40.1</td>
852 <td>100%</td>
853 <td>1.513e-07</td>
854 <td>100%</td>
855 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a></td>
856 </tr>
857 <tr>
858 <td><div><a href="#hit2"
859 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
860 id="description2">
861 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
862 </a></div></td>
863 <td>40.1</td>
864 <td>40.1</td>
865 <td>100%</td>
866 <td>1.513e-07</td>
867 <td>100%</td>
868 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a></td>
869 </tr>
870 <tr>
871 <td><div><a href="#hit3"
872 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000"
873 id="description3">
874 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000
875 </a></div></td>
876 <td>34.2</td>
877 <td>34.2</td>
878 <td>85%</td>
879 <td>9.334e-06</td>
880 <td>100%</td>
881 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">1</a></td>
882 </tr>
883 </table>
884
885 </div></div>
886 </section>
887
888
889
890 <section class=alignments>
891 <h2>Alignments</h2>
892
893 <div class=grey><div class=white>
894 <div class=alignment id=hit1>
895
896 <div class=linkheader>
897 <div class=right><a href="#description1">Descriptions</a></div>
898 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
899 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
900 </div>
901
902 <div class=title>
903 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
904 <p class=titleinfo>
905 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">5</a>
906 <span class=b>Length:</span> 2457
907 <span class=b>Number of Matches:</span> 1
908 </p>
909 </div>
910
911
912 <div class=hotspot>
913 <p class=range>
914 <span class=range>Range 1: 2143 to 2162</span>
915 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2143&amp;to=2162">GenBank</a>
916 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2143&amp;to=2162">Graphics</a>
917 </p>
918
919 <table class=hotspotstable>
920 <tr>
921 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
922 </tr>
923 <tr>
924 <td>40.1 bits(20)</td>
925 <td>0.0</td>
926 <td>20/20(100%)</td>
927 <td>0/20(0%)</td>
928 <td>Plus/Plus</td>
929 </tr>
930 </table>
931
932 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
933 ||||||||||||||||||||
934 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
935 </div>
936
937 </div>
938
939 <div class=alignment id=hit2>
940
941 <div class=linkheader>
942 <div class=right><a href="#description2">Descriptions</a></div>
943 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
944 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
945 </div>
946
947 <div class=title>
948 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
949 <p class=titleinfo>
950 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">2</a>
951 <span class=b>Length:</span> 323
952 <span class=b>Number of Matches:</span> 1
953 </p>
954 </div>
955
956
957 <div class=hotspot>
958 <p class=range>
959 <span class=range>Range 1: 224 to 243</span>
960 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=224&amp;to=243">GenBank</a>
961 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=224&amp;to=243">Graphics</a>
962 </p>
963
964 <table class=hotspotstable>
965 <tr>
966 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
967 </tr>
968 <tr>
969 <td>40.1 bits(20)</td>
970 <td>0.0</td>
971 <td>20/20(100%)</td>
972 <td>0/20(0%)</td>
973 <td>Plus/Plus</td>
974 </tr>
975 </table>
976
977 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
978 ||||||||||||||||||||
979 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
980 </div>
981
982 </div>
983
984 <div class=alignment id=hit3>
985
986 <div class=linkheader>
987 <div class=right><a href="#description3">Descriptions</a></div>
988 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
989 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
990 </div>
991
992 <div class=title>
993 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
994 <p class=titleinfo>
995 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">1</a>
996 <span class=b>Length:</span> 1045
997 <span class=b>Number of Matches:</span> 1
998 </p>
999 </div>
1000
1001
1002 <div class=hotspot>
1003 <p class=range>
1004 <span class=range>Range 1: 2 to 18</span>
1005 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2&amp;to=18">GenBank</a>
1006 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2&amp;to=18">Graphics</a>
1007 </p>
1008
1009 <table class=hotspotstable>
1010 <tr>
1011 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1012 </tr>
1013 <tr>
1014 <td>34.2 bits(17)</td>
1015 <td>0.0</td>
1016 <td>17/17(100%)</td>
1017 <td>0/17(0%)</td>
1018 <td>Plus/Plus</td>
1019 </tr>
1020 </table>
1021
1022 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
1023 |||||||||||||||||
1024 Subject 2 GCGCGGTGTCATCTATG 18</pre>
1025 </div>
1026
1027 </div>
1028
1029 </div></div>
1030 </section>
1031 </section>
1032
1033 <section class=match id=match4>
1034
1035 <h1>Nucleotide Sequence (24 letters)</h1>
1036
1037 <section class=header>
1038
1039 <table class=headerdata>
1040 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1041 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1042 <tr><td class=param>Query length:</td><td>20</td></tr>
1043 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1044 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1045 </table>
1046
1047 </section>
1048
1049 <section>
1050 <h2>No Hits</h2>
1051 <div class=grey>
1052 <table class=headerdata>
1053 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1054 </table>
1055 </div>
1056 </section>
1057 </section>
1058
1059 <section class=match id=match5>
1060
1061 <h1>Nucleotide Sequence (20 letters)</h1>
1062
1063 <section class=header>
1064
1065 <table class=headerdata>
1066 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1067 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1068 <tr><td class=param>Query length:</td><td>20</td></tr>
1069 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1070 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1071 </table>
1072
1073 </section>
1074
1075 <section>
1076 <h2>No Hits</h2>
1077 <div class=grey>
1078 <table class=headerdata>
1079 <tr><td class=param>Message:</td><td>No hits found</td></tr>
1080 </table>
1081 </div>
1082 </section>
1083 </section>
1084
1085 <section class=match id=match6>
1086
1087 <h1>Nucleotide Sequence (25 letters)</h1>
1088
1089 <section class=header>
1090
1091 <table class=headerdata>
1092 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1093 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1094 <tr><td class=param>Query length:</td><td>20</td></tr>
1095 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1096 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1097 </table>
1098
1099 </section>
1100
1101
1102 <section class=graphics>
1103 <h2>Graphic Summary</h2>
1104
1105 <div class=grey>
1106 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
1107
1108 <div class=defline id=defline6>
1109 Mouse-over to show defline and scores, click to show alignments
1110 </div>
1111
1112 <div class=graphic>
1113 <h4 class=darkHeader>Color key for alignment scores</h4>
1114 <div class=legend><div class=graphicrow>
1115 <div class=graphicitem style="background-color: black">&lt;40</div>
1116 <div class=graphicitem style="background-color: blue">40–50</div>
1117 <div class=graphicitem style="background-color: green">50–80</div>
1118 <div class=graphicitem style="background-color: magenta">80–200</div>
1119 <div class=graphicitem style="background-color: red">200≤</div>
1120 </div></div>
1121 <div style="clear: left"></div>
1122
1123 <div class=tablewrapper>
1124
1125 <div class=scale>
1126 <div>query:</div>
1127 <div class=graphicrow>
1128 <div>
1129 <div class=graphicitem style="width: 12.0%">
1130 <div>3</div>
1131 </div>
1132 <div class=graphicitem style="width: 12.0%">
1133 <div>6</div>
1134 </div>
1135 <div class=graphicitem style="width: 12.0%">
1136 <div>9</div>
1137 </div>
1138 <div class=graphicitem style="width: 12.0%">
1139 <div>12</div>
1140 </div>
1141 <div class=graphicitem style="width: 12.0%">
1142 <div>15</div>
1143 </div>
1144 <div class=graphicitem style="width: 12.0%">
1145 <div>18</div>
1146 </div>
1147 <div class=graphicitem style="width: 12.0%">
1148 <div>21</div>
1149 </div>
1150 <div class=graphicitem style="width: 12.0%">
1151 <div>24</div>
1152 </div>
1153 <div class=graphicitem style="width: 4.0%">
1154 <div>25</div>
1155 </div>
1156 </div>
1157 </div>
1158 <div style="clear: left"></div>
1159 </div>
1160
1161 <a class=matchresult
1162 href="#hit1"
1163 onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
1164 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
1165 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
1166 <div class="matchrow graphicrow">
1167 <div class="matchitem graphicitem"
1168 style="background-color: black; width: 88.0%"></div>
1169 <div class="matchitem graphicitem"
1170 style="background-color: transparent; width: 12.0%"></div>
1171 </div>
1172 </a>
1173
1174 <a class=matchresult
1175 href="#hit2"
1176 onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
1177 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
1178 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
1179 <div class="matchrow graphicrow">
1180 <div class="matchitem graphicitem"
1181 style="background-color: black; width: 88.0%"></div>
1182 <div class="matchitem graphicitem"
1183 style="background-color: transparent; width: 12.0%"></div>
1184 </div>
1185 </a>
1186
1187 </div>
1188 </div>
1189 </div>
1190 </section>
1191
1192
1193
1194 <section class=descriptions>
1195 <h2>Descriptions</h2>
1196
1197 <div class=grey><div class=white>
1198 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
1199
1200 <table class=descriptiontable>
1201 <col/><col/><col/><col/><col/><col/><col/>
1202 <tr>
1203 <th>Description</th>
1204 <th>Max score</th>
1205 <th>Total score</th>
1206 <th>Query cover</th>
1207 <th>E value</th>
1208 <th>Ident</th>
1209 <th>Accession</th>
1210 </tr>
1211 <tr>
1212 <td><div><a href="#hit1"
1213 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
1214 id="description1">
1215 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
1216 </a></div></td>
1217 <td>36.2</td>
1218 <td>36.2</td>
1219 <td>88%</td>
1220 <td>3.148e-06</td>
1221 <td>95%</td>
1222 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a></td>
1223 </tr>
1224 <tr>
1225 <td><div><a href="#hit2"
1226 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
1227 id="description2">
1228 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
1229 </a></div></td>
1230 <td>36.2</td>
1231 <td>36.2</td>
1232 <td>88%</td>
1233 <td>3.148e-06</td>
1234 <td>95%</td>
1235 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a></td>
1236 </tr>
1237 </table>
1238
1239 </div></div>
1240 </section>
1241
1242
1243
1244 <section class=alignments>
1245 <h2>Alignments</h2>
1246
1247 <div class=grey><div class=white>
1248 <div class=alignment id=hit1>
1249
1250 <div class=linkheader>
1251 <div class=right><a href="#description1">Descriptions</a></div>
1252 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
1253 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
1254 </div>
1255
1256 <div class=title>
1257 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
1258 <p class=titleinfo>
1259 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a>
1260 <span class=b>Length:</span> 4983
1261 <span class=b>Number of Matches:</span> 1
1262 </p>
1263 </div>
1264
1265
1266 <div class=hotspot>
1267 <p class=range>
1268 <span class=range>Range 1: 2344 to 2365</span>
1269 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2344&amp;to=2365">GenBank</a>
1270 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2344&amp;to=2365">Graphics</a>
1271 </p>
1272
1273 <table class=hotspotstable>
1274 <tr>
1275 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1276 </tr>
1277 <tr>
1278 <td>36.2 bits(18)</td>
1279 <td>0.0</td>
1280 <td>21/22(95%)</td>
1281 <td>0/22(0%)</td>
1282 <td>Plus/Plus</td>
1283 </tr>
1284 </table>
1285
1286 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
1287 |||||||||||||| |||||||
1288 Subject 2344 ACATGAACAGCGCCCTGACCAC 2365</pre>
1289 </div>
1290
1291 </div>
1292
1293 <div class=alignment id=hit2>
1294
1295 <div class=linkheader>
1296 <div class=right><a href="#description2">Descriptions</a></div>
1297 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
1298 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
1299 </div>
1300
1301 <div class=title>
1302 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
1303 <p class=titleinfo>
1304 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a>
1305 <span class=b>Length:</span> 4180
1306 <span class=b>Number of Matches:</span> 1
1307 </p>
1308 </div>
1309
1310
1311 <div class=hotspot>
1312 <p class=range>
1313 <span class=range>Range 1: 1541 to 1562</span>
1314 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=1541&amp;to=1562">GenBank</a>
1315 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=1541&amp;to=1562">Graphics</a>
1316 </p>
1317
1318 <table class=hotspotstable>
1319 <tr>
1320 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1321 </tr>
1322 <tr>
1323 <td>36.2 bits(18)</td>
1324 <td>0.0</td>
1325 <td>21/22(95%)</td>
1326 <td>0/22(0%)</td>
1327 <td>Plus/Plus</td>
1328 </tr>
1329 </table>
1330
1331 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
1332 |||||||||||||| |||||||
1333 Subject 1541 ACATGAACAGCGCCCTGACCAC 1562</pre>
1334 </div>
1335
1336 </div>
1337
1338 </div></div>
1339 </section>
1340 </section>
1341
1342 <section class=match id=match7>
1343
1344 <h1>Nucleotide Sequence (74 letters)</h1>
1345
1346 <section class=header>
1347
1348 <table class=headerdata>
1349 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
1350 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
1351 <tr><td class=param>Query length:</td><td>20</td></tr>
1352 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
1353 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
1354 </table>
1355
1356 </section>
1357
1358
1359 <section class=graphics>
1360 <h2>Graphic Summary</h2>
1361
1362 <div class=grey>
1363 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
1364
1365 <div class=defline id=defline7>
1366 Mouse-over to show defline and scores, click to show alignments
1367 </div>
1368
1369 <div class=graphic>
1370 <h4 class=darkHeader>Color key for alignment scores</h4>
1371 <div class=legend><div class=graphicrow>
1372 <div class=graphicitem style="background-color: black">&lt;40</div>
1373 <div class=graphicitem style="background-color: blue">40–50</div>
1374 <div class=graphicitem style="background-color: green">50–80</div>
1375 <div class=graphicitem style="background-color: magenta">80–200</div>
1376 <div class=graphicitem style="background-color: red">200≤</div>
1377 </div></div>
1378 <div style="clear: left"></div>
1379
1380 <div class=tablewrapper>
1381
1382 <div class=scale>
1383 <div>query:</div>
1384 <div class=graphicrow>
1385 <div>
1386 <div class=graphicitem style="width: 10.81081081081081%">
1387 <div>8</div>
1388 </div>
1389 <div class=graphicitem style="width: 10.81081081081081%">
1390 <div>16</div>
1391 </div>
1392 <div class=graphicitem style="width: 10.81081081081081%">
1393 <div>24</div>
1394 </div>
1395 <div class=graphicitem style="width: 10.81081081081081%">
1396 <div>32</div>
1397 </div>
1398 <div class=graphicitem style="width: 10.81081081081081%">
1399 <div>40</div>
1400 </div>
1401 <div class=graphicitem style="width: 10.81081081081081%">
1402 <div>48</div>
1403 </div>
1404 <div class=graphicitem style="width: 10.81081081081081%">
1405 <div>56</div>
1406 </div>
1407 <div class=graphicitem style="width: 10.81081081081081%">
1408 <div>64</div>
1409 </div>
1410 <div class=graphicitem style="width: 10.81081081081081%">
1411 <div>72</div>
1412 </div>
1413 <div class=graphicitem style="width: 2.7027027027027026%">
1414 <div>&nbsp;</div>
1415 <div class=lastlabel>74</div>
1416 </div>
1417 </div>
1418 </div>
1419 <div style="clear: left"></div>
1420 </div>
1421
1422 <a class=matchresult
1423 href="#hit1"
1424 onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
1425 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
1426 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
1427 <div class="matchrow graphicrow">
1428 <div class="matchitem graphicitem"
1429 style="background-color: green; width: 100.0%"></div>
1430 </div>
1431 </a>
1432
1433 <a class=matchresult
1434 href="#hit2"
1435 onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
1436 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
1437 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
1438 <div class="matchrow graphicrow">
1439 <div class="matchitem graphicitem"
1440 style="background-color: green; width: 100.0%"></div>
1441 </div>
1442 </a>
1443
1444 </div>
1445 </div>
1446 </div>
1447 </section>
1448
1449
1450
1451 <section class=descriptions>
1452 <h2>Descriptions</h2>
1453
1454 <div class=grey><div class=white>
1455 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
1456
1457 <table class=descriptiontable>
1458 <col/><col/><col/><col/><col/><col/><col/>
1459 <tr>
1460 <th>Description</th>
1461 <th>Max score</th>
1462 <th>Total score</th>
1463 <th>Query cover</th>
1464 <th>E value</th>
1465 <th>Ident</th>
1466 <th>Accession</th>
1467 </tr>
1468 <tr>
1469 <td><div><a href="#hit1"
1470 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
1471 id="description1">
1472 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
1473 </a></div></td>
1474 <td>67.9</td>
1475 <td>67.9</td>
1476 <td>100%</td>
1477 <td>3.564e-15</td>
1478 <td>86%</td>
1479 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a></td>
1480 </tr>
1481 <tr>
1482 <td><div><a href="#hit2"
1483 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
1484 id="description2">
1485 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
1486 </a></div></td>
1487 <td>67.9</td>
1488 <td>67.9</td>
1489 <td>100%</td>
1490 <td>3.564e-15</td>
1491 <td>86%</td>
1492 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a></td>
1493 </tr>
1494 </table>
1495
1496 </div></div>
1497 </section>
1498
1499
1500
1501 <section class=alignments>
1502 <h2>Alignments</h2>
1503
1504 <div class=grey><div class=white>
1505 <div class=alignment id=hit1>
1506
1507 <div class=linkheader>
1508 <div class=right><a href="#description1">Descriptions</a></div>
1509 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
1510 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
1511 </div>
1512
1513 <div class=title>
1514 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
1515 <p class=titleinfo>
1516 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">7</a>
1517 <span class=b>Length:</span> 4983
1518 <span class=b>Number of Matches:</span> 1
1519 </p>
1520 </div>
1521
1522
1523 <div class=hotspot>
1524 <p class=range>
1525 <span class=range>Range 1: 2319 to 2392</span>
1526 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=2319&amp;to=2392">GenBank</a>
1527 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=2319&amp;to=2392">Graphics</a>
1528 </p>
1529
1530 <table class=hotspotstable>
1531 <tr>
1532 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1533 </tr>
1534 <tr>
1535 <td>67.9 bits(34)</td>
1536 <td>0.0</td>
1537 <td>64/74(86%)</td>
1538 <td>0/74(0%)</td>
1539 <td>Plus/Plus</td>
1540 </tr>
1541 </table>
1542
1543 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
1544 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
1545 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 2392</pre>
1546 </div>
1547
1548 </div>
1549
1550 <div class=alignment id=hit2>
1551
1552 <div class=linkheader>
1553 <div class=right><a href="#description2">Descriptions</a></div>
1554 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">GenBank</a>
1555 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign">Graphics</a>
1556 </div>
1557
1558 <div class=title>
1559 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
1560 <p class=titleinfo>
1561 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign">6</a>
1562 <span class=b>Length:</span> 4180
1563 <span class=b>Number of Matches:</span> 1
1564 </p>
1565 </div>
1566
1567
1568 <div class=hotspot>
1569 <p class=range>
1570 <span class=range>Range 1: 1516 to 1589</span>
1571 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&amp;log$=nuclalign&amp;from=1516&amp;to=1589">GenBank</a>
1572 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&amp;log$=nuclalign&amp;from=1516&amp;to=1589">Graphics</a>
1573 </p>
1574
1575 <table class=hotspotstable>
1576 <tr>
1577 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
1578 </tr>
1579 <tr>
1580 <td>67.9 bits(34)</td>
1581 <td>0.0</td>
1582 <td>64/74(86%)</td>
1583 <td>0/74(0%)</td>
1584 <td>Plus/Plus</td>
1585 </tr>
1586 </table>
1587
1588 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
1589 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
1590 Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 1589</pre>
1591 </div>
1592
1593 </div>
1594
1595 </div></div>
1596 </section>
1597 </section>
1598
1599 </div>
1600
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1602 This page was generated by <a href="...">blast2html</a>.
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1606