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<title>NCBI Blast:Nucleotide Sequence (16 letters)</title>
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<body id="type-a" class="noToggleCheck ">
<div id="wrap">
			

                
                
<div id="page">

<div id="summary" class="">
<div id="ht"></div>
<h1>Nucleotide Sequence (16 letters) <span id="hdTitle" class="shownInl"></span></h1>
<div>
<div id="multipleSeqs" class="hidden">
<label for="queryList">Results for:</label>
<select id="queryList" name="queryList">
<option value="0" selected="selected" class="">lcl|59987 None(16bp)</option>
</select>
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="queryInfo" title="Multiple quries help" id="queryHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
</div><!--/#multipleSeqs"-->

<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" id="queryInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
Your BLAST job specified more than one input sequence.
This box lets you choose which input sequence to show BLAST results for.
</p>
</div><!-- ARIA -->
</div>
<div id="summarylists">
<dl>
<dt>RID</dt>
<dd>
<a title="BLAST search request ID" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014">PHWP1JNZ014</a> (Expires on 05-07 22:33 pm)

<dt class="xgl">Program</dt>
<dd class="xgl">BLASTN 2.2.29+ <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="How to cite BLAST in publications" class="resArrowLinkB hidden shown jig-ncbitoggler ui-ncbitoggler jtg ui-widget" data-ncbitoggler-toggles="refInfo" id="showRefs"><span class="ui-ncbitoggler-master-text">Citation</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd>
</dl>
</div><!--/#dbsummary-->
</div><!--/#summarylists -->
<br>
<div class="ui-helper-reset" aria-live="assertive">  
<div aria-hidden="true" id="dbDetails" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
 <!-- multiple databases or subjects table -->
</div>
</div> <!-- aria end -->
<div class="ui-helper-reset" aria-live="assertive">  
<div aria-hidden="true" id="refInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> 
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&amp;cmd=Retrieve&amp;list_uids=9254694&amp;dopt=Citation">Reference </a>
<div>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
 programs", Nucleic Acids Res. 25:3389-3402.</div>       
 </div>  <!-- refInfo -->
</div> <!-- aria end -->

<div id="seealso">
<label>Other reports:</label>  
 <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="Show statistics" class="resArrowLinkB jtg jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="resStat" id="showStat"><span class="ui-ncbitoggler-master-text">Search Summary</span><span class="ui-icon ui-icon-triangle-1-e"></span></a>
 <span class="xgl">
 <a id="tax" class="hidden shown" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;RID=PHWP1JNZ014&amp;FORMAT_OBJECT=TaxBlast&amp;NCBI_GI=off&amp;DESCRIPTIONS=100&amp;ALIGNMENTS=100&amp;FORMAT_BLOCK_ON_RESPAGE=Top&amp;MASK_COLOR=1&amp;MASK_CHAR=2" target="lnkPHWP1JNZ014" title="See results arranged by taxonomy">[Taxonomy reports]</a>
 <a href="http://www.ncbi.nlm.nih.gov/blast/treeview/treeView.cgi?request=page&amp;blastRID=PHWP1JNZ014&amp;queryID=lcl%7C59987&amp;entrezLim=&amp;ex=&amp;exl=&amp;exh=&amp;ns=100" class="" id="TreeViewlcl|59987" onclick="ViewTree('TreeViewlcl|59987');return false;" target="lnkPHWP1JNZ014" title="See a distance tree of these pairwise comparisons">[Distance tree of results]</a>      
   
  
  
 </span>
</div> <!-- seealso -->
   
<div class="ui-helper-reset" aria-live="assertive">  
<div aria-hidden="true" id="resStat" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">    
 <table id="params" class="dbInfo"> 
 <caption>Search Parameters</caption> 
 <tbody><tr><th><div>Search parameter name</div></th><th><div>Search parameter value</div></th></tr> 
 <tr><td>Program</td><td>blastn</td></tr><tr><td>Word size</td><td>7</td></tr><tr><td>Expect value</td><td>1000</td></tr><tr><td>Hitlist size</td><td>100</td></tr><tr><td>Match/Mismatch scores</td><td>1,-3</td></tr><tr><td>Gapcosts</td><td>5,2</td></tr><tr><td>Filter string </td><td>F</td></tr><tr><td>Genetic Code</td><td>1</td></tr>  
 </tbody></table> 
  <table id="dbStat" class="dbInfo">
 <caption>Database</caption>
 <tbody><tr><th><div>Database parameter name</div></th><th><div>Database parameter value</div></th></tr>
 <tr><td>Posted date</td><td>Apr 29, 2014  3:14 AM</td></tr>
 <tr><td>Number of letters</td><td>885,284</td></tr>
 <tr><td>Number of sequences</td><td>8,975</td></tr>
 <tr><td>Entrez query</td><td>none</td></tr> 
 </tbody></table>
  
 <table id="Kappa" class="dbInfo show xgl"> 
<caption>Karlin-Altschul statistics</caption> 
 <tbody><tr><th><div>Params</div></th><th><div>Ungapped</div></th><th><div>Gapped</div></th></tr>
 <tr><td>Lambda</td><td>1.37406</td><td>1.37406</td></tr>
 <tr><td>K</td><td>0.710603</td><td>0.710603</td></tr>
 <tr><td>H</td><td>1.30725</td><td>1.30725</td></tr> 
 
 </tbody></table> 
 
 
 <table class="dbInfo show">
 <caption>Results Statistics</caption>
 <tbody><tr><th><div>Results Statistics parameter name</div></th><th><div>Results Statistics parameter value</div></th></tr>  
 <tr><td>Length adjustment</td><td> 11</td></tr><tr><td>Effective length of query</td><td> 5</td></tr><tr><td>Effective length of database</td><td> 786559</td></tr><tr><td>Effective search space</td><td> 3932795</td></tr><tr><td>Effective search space used</td><td> 3932795</td></tr>
 </tbody></table>
 <!-- Results statistics -->  
 </div>  <!-- resStat -->
 </div> <!-- aria end -->
</div><!--/#summary-->
</div><!--/#page-->


<div id="grView" class="hidden shown">

<div id="graphic" class="hidden shown">
<h3>Distribution of 45 Blast Hits on the Query Sequence
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a></h3>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" id="ovrInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
An overview of the database sequences aligned to the query sequence is 
shown. The score of each alignment is indicated by one of five 
different colors, which divides the range of scores into five groups. 
Multiple alignments on the same database sequence are connected 
by a striped line. <span class="hl">Mousing over</span> a hit sequence causes the definition and score to be shown in the window at the top, 
<span class="hl">clicking</span> on a hit sequence takes the user to the associated alignments.
New:
This graphic is an overview of database sequences aligned to the query sequence.
Alignments are color-coded by score, within one of five score ranges.  
Multiple alignments on the same database sequence are connected by a dashed line.
<span class="hl">Mousing</span> over an alignment shows the alignment definition and score in the box at the top. 
<span class="hl">Clicking</span> an alignment displays the alignment detail.
</p>
</div><!-- ARIA -->
<center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="51"></td>

</a>
</h2>
<div class="ui-helper-reset" aria-live="assertive">
<div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
 <!-- legend to links to other resources -->
<a name="sort_mark"></a>


<div id="debug">, Reading indexes 1-5, displaying indexes 1-5</div>
<input id="Rid" value="PHWP1JNZ014" type="hidden">
<input id="useAlignDB" name="useAlignDB" value="" type="hidden">
<input id="dbType" value="GenBank" type="hidden"><!-- Indicates genbank, etc -->
<input id="serviceType" value="plain" type="hidden">
<input id="clientType" value="web" type="hidden">
<input id="currQuery" value="" type="hidden">
<input id="minDispAlnLen" value="2000" type="hidden">
<input id="maxDispAlnLen" value="20000" type="hidden">
<div class="hidden" id="dynHspTmpl"><div class="alnParLinks moreHsps" id="@moreHspsID@"><a class="gbd toolsCtr navNext" title="Load matches @segs@ out of @totalHSP@ for @accs@" onmouseover="scan(this)" ref="range=@segs@&amp;currseq=@alnSeqGi@" onclick="ReadNextHSPSet(@argstring@);"><span>Load next set</span></a><a class="gbd toolsCtr navPrev" title="Go to previous match #@aln_prev_num@ for @accs@" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a></div></div>
<div id="descriptions" class="blRes">
<!--<pre> -->
<div class="cap">Sequences producing significant alignments:</div>
<a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden">
Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span>

<div id="descTblCtrl" class="cnf">
<a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a>

<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsDownload" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
<div class=""><input name="dwn" checked="checked" id="dwFST" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST">FASTA (complete sequence)</label></div>
<div class=""><input name="dwn" id="dwFSTAl" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl">FASTA (aligned sequences)</label></div>
<div class=""><input name="dwn" id="dwGenBank" getgi="on" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class=" shownInl" for="dwGenBank">GenBank (complete sequence)</label></div>
<div><input name="dwn" id="dwHitText" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get" type="radio"><label class="shownInl" for="dwHitText">Hit Table (text)</label></div>
<div><input name="dwn" id="dwHitCsv" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=CSV&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get" type="radio"><label class="shownInl" for="dwHitCsv">Hit Table (CSV)</label></div>
<div><input name="dwn" id="dwText" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwText">Text</label></div>
<div><input name="dwn" id="dwXML" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=XML&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwXML">XML</label></div>
<div><input name="dwn" id="dwASN" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=ASN.1&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwASN">ASN.1</label></div>
<div>
<button class="cfg" id="dw_cont">Continue</button>
<button class="cfg cnc">Cancel</button>
</div>  
</div> <!-- dsDownload -->





<a href="#" class="toolsCtr" minslct="1" view="dflt" frm="submitterTop" seqlist="selSeqs" title="See genbank report for selected sequences" disabled="disabled">GenBank</a> <!-- genbank or Traces -->
<a href="#" class="toolsCtr " minslct="1" view="graph" title="See graphic representation for selected sequences" disabled="disabled">Graphics</a>
<a href="#" class="toolsCtr hidden shown" view="tree" minslct="1" frm="sbmtTreeView" seqlist="selSeqsTr" disabled="disabled" title="See a distance tree of pairwise comparisons for the selected sequences">Distance tree of results</a>
<a href="#" class="toolsCtr hidden " view="dflt" minslct="2" frm="sbmtMultiAln" seqlist="selSeqsMl" disabled="disabled" title="See multple alignment of query and target sequences for the selected sequences with expect value better than 0.001">Multiple alignment</a>

<a aria-haspopup="true" aria-expanded="false" role="button" class="jig-ncbipopper button_config" title="Show/hide columns" id="button_config" href="#dsConfig"><span class="accsb">Show/hide columns of the table presenting sequences producing significant alignments </span></a>

<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsConfig" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
<div class="tl">Available columns</div>
<input checked="checked" id="chkDs" value="2" type="checkbox"><label class="shownInl" for="chkDs">Description</label><br>
<input checked="checked" id="chkMS" value="3" type="checkbox"><label class="shownInl" for="chkMs">Max Score</label><br>
<input checked="checked" id="chkTS" value="4" type="checkbox"><label class="shownInl" for="chkTs">Total Score</label><br>
<input checked="checked" id="chkCov" value="5" type="checkbox"><label class="shownInl" for="chkCov">Coverage</label><br>
<input checked="checked" id="chkEval" value="6" type="checkbox"><label class="shownInl" for="chkEval">E-value</label><br>
<input checked="checked" id="chkIdnt" value="7" type="checkbox"><label class="shownInl" for="chkIdnt"><span class="">Ident</span><span class="hidden">N</span></label><br>
<input checked="checked" id="chkAcc" value="8" type="checkbox"><label class="shownInl" for="chkAcc">Accession</label><br>
<button class="cfg rdf" id="dscRsDf">Restore Defaults</button>
<button class="cfg" id="dscOk">Ok</button>
<button class="cfg cnc" id="dscCnc">Cancel</button>
</div> <!-- dsConfig -->       

<input id="cfcDsInf" defval="2,3,4,5,6,7,8" value="2,3,4,5,6,7,8" type="hidden">
</div>
<div class="ui-ncbigrid-outer-div caption-exists">
<div class="ui-ncbigrid-inner-div">
<table id="dscTable" class="jig-ncbigrid  ui-ncbigrid" data-jigconfig="" cellpadding="0" cellspacing="0">
<caption class="hdnHeader">Sequences producing significant alignments:</caption>  

</div>
<div id="hd_557804451_2">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
<span id="hsp557804451_2" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #2</caption>

</pre>
</div>
<div id="hd_557804451_4">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
<span id="hsp557804451_4" class="alnParLinks">
<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #4</caption>

   </div><!--/#wrap-->

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<title>NCBI Blast:Nucleotide Sequence (16 letters)</title>
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<h1>Nucleotide Sequence (16 letters) </h1>

<div id="summarylists">
<dl>
<dt>RID</dt>
<dd>
<a title="BLAST search request ID" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014">PHWP1JNZ014</a> (Expires on 05-07 22:33 pm)

<dt class="xgl">Program</dt>
<dd class="xgl">BLASTN 2.2.29+ <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="How to cite BLAST in publications" class="resArrowLinkB hidden shown jig-ncbitoggler ui-ncbitoggler jtg ui-widget" data-ncbitoggler-toggles="refInfo" id="showRefs"><span class="ui-ncbitoggler-master-text">Citation</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd>
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<h3>Distribution of 45 Blast Hits on the Query Sequence
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<center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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<div id="descriptions" class="blRes">
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<div class="cap">Sequences producing significant alignments:</div>
<a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden">
Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span>

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<a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a>

 <!-- dsDownload -->





<a href="#" class="toolsCtr" minslct="1" view="dflt" frm="submitterTop" seqlist="selSeqs" title="See genbank report for selected sequences" disabled="disabled">GenBank</a> <!-- genbank or Traces -->
<a href="#" class="toolsCtr " minslct="1" view="graph" title="See graphic representation for selected sequences" disabled="disabled">Graphics</a>
<a href="#" class="toolsCtr hidden shown" view="tree" minslct="1" frm="sbmtTreeView" seqlist="selSeqsTr" disabled="disabled" title="See a distance tree of pairwise comparisons for the selected sequences">Distance tree of results</a>


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<table id="dscTable" class="jig-ncbigrid  ui-ncbigrid" data-jigconfig="" cellpadding="0" cellspacing="0">
<caption class="hdnHeader">Sequences producing significant alignments:</caption>  

</div>
<div id="hd_557804451_2">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
<span id="hsp557804451_2" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #2</caption>

</pre>
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<div id="hd_557804451_4">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
<span id="hsp557804451_4" class="alnParLinks">
<a init="on" class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #4</caption>

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