Mercurial > repos > jankanis > blast2html

comparison Blast output page example trimmed.html @ 1:ffe82516a83c

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add trimmed down html example
author Jan Kanis <jan.code@jankanis.nl>
date Tue, 06 May 2014 17:36:10 +0200
parents
children f6cd51710678
comparison
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0:bad241dc701f 1:ffe82516a83c
1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
2 <html xmlns="http://www.w3.org/1999/xhtml"><head>
3
4 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
5 <meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1">
6 <meta name="jig" content="ncbitoggler ncbiautocomplete ncbilocalnav ncbigrid ncbipopper">
7 <meta name="ncbitoggler" content="animation:'none'">
8 <meta name="ncbipopper" content="animation:'none',closeEvent: 'click',openEvent: 'click',destPosition: 'top right',triggerPosition: 'bottom right'">
9
10 <meta name="ncbi_app" content="blast">
11 <meta name="ncbi_pdid" content="blastresults">
12 <meta name="ncbi_stat" content="false">
13 <meta name="ncbi_sessionid" content="8A8E11EE2CABF371_0000SID">
14 <meta name="ncbi_phid" content="5AAB74D7368F2C81000000000000C9C8">
15 <script type="text/javascript"> var ncbi_startTime = new Date(); </script>
16 <title>NCBI Blast:Nucleotide Sequence (16 letters)</title>
17 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jig.js"></script><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.themenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbitogglernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbitogglernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbiautocompletenull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbiautocompletenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibasicmenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibasicmenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbimenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbimenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbilocalnavnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbilocalnavnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.buttonnull"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibuttonnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibuttonnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbipoppernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbipoppernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbigridnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbigridnull"><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_005.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_004.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_004.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_007.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_003.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_007.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_008.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_008.js"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_005.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_009.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_006.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_006.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.css">
18 <script type="text/javascript"> jQuery.getScript("/core/alerts/alerts.js", function() {
19 galert(['div#header', 'body > *:nth-child(1)'])
20 });</script>
21 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/main.css" media="screen">
22 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastRes.css" media="screen">
23 <!--[if IE]>
24 <link rel="stylesheet" type="text/css" href="css/descriptionsIE.css" media="screen" />
25 <![endif]-->
26 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/print.css" media="print">
27 <!--[if lte IE 6]>
28 <link rel="stylesheet" type="text/css" href="css/ie6_or_less.css" />
29 <![endif]-->
30 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastReq.css" media="screen">
31 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/results.css" media="screen">
32 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/dynFormatRes.css" media="screen">
33
34 <style media="print" type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }.print-log li { list-style-image: url('/stat?jsevent=print&ncbi_app=blast&ncbi_pdid=blastresults&ncbi_phid=5AAB74D7368F2C81000000000000C9C8'); }</style><style type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }</style><style type="text/css" charset="utf-8">/* See license.txt for terms of usage */
35 /** reset styling **/
36 .firebugResetStyles {
37 z-index: 2147483646 !important;
38 top: 0 !important;
39 left: 0 !important;
40 display: block !important;
41 border: 0 none !important;
42 margin: 0 !important;
43 padding: 0 !important;
44 outline: 0 !important;
45 min-width: 0 !important;
46 max-width: none !important;
47 min-height: 0 !important;
48 max-height: none !important;
49 position: fixed !important;
50 transform: rotate(0deg) !important;
51 transform-origin: 50% 50% !important;
52 border-radius: 0 !important;
53 box-shadow: none !important;
54 background: transparent none !important;
55 pointer-events: none !important;
56 white-space: normal !important;
57 }
58
59 .firebugBlockBackgroundColor {
60 background-color: transparent !important;
61 }
62
63 .firebugResetStyles:before, .firebugResetStyles:after {
64 content: "" !important;
65 }
66 /**actual styling to be modified by firebug theme**/
67 .firebugCanvas {
68 display: none !important;
69 }
70
71 /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
72 .firebugLayoutBox {
73 width: auto !important;
74 position: static !important;
75 }
76
77 .firebugLayoutBoxOffset {
78 opacity: 0.8 !important;
79 position: fixed !important;
80 }
81
82 .firebugLayoutLine {
83 opacity: 0.4 !important;
84 background-color: #000000 !important;
85 }
86
87 .firebugLayoutLineLeft, .firebugLayoutLineRight {
88 width: 1px !important;
89 height: 100% !important;
90 }
91
92 .firebugLayoutLineTop, .firebugLayoutLineBottom {
93 width: 100% !important;
94 height: 1px !important;
95 }
96
97 .firebugLayoutLineTop {
98 margin-top: -1px !important;
99 border-top: 1px solid #999999 !important;
100 }
101
102 .firebugLayoutLineRight {
103 border-right: 1px solid #999999 !important;
104 }
105
106 .firebugLayoutLineBottom {
107 border-bottom: 1px solid #999999 !important;
108 }
109
110 .firebugLayoutLineLeft {
111 margin-left: -1px !important;
112 border-left: 1px solid #999999 !important;
113 }
114
115 /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
116 .firebugLayoutBoxParent {
117 border-top: 0 none !important;
118 border-right: 1px dashed #E00 !important;
119 border-bottom: 1px dashed #E00 !important;
120 border-left: 0 none !important;
121 position: fixed !important;
122 width: auto !important;
123 }
124
125 .firebugRuler{
126 position: absolute !important;
127 }
128
129 .firebugRulerH {
130 top: -15px !important;
131 left: 0 !important;
132 width: 100% !important;
133 height: 14px !important;
134 background: url("data:image/png,%89PNG%0D%0A%1A%0A%00%00%00%0DIHDR%00%00%13%88%00%00%00%0E%08%02%00%00%00L%25a%0A%00%00%00%04gAMA%00%00%D6%D8%D4OX2%00%00%00%19tEXtSoftware%00Adobe%20ImageReadyq%C9e%3C%00%00%04%F8IDATx%DA%EC%DD%D1n%E2%3A%00E%D1%80%F8%FF%EF%E2%AF2%95%D0D4%0E%C1%14%B0%8Fa-%E9%3E%CC%9C%87n%B9%81%A6W0%1C%A6i%9A%E7y%0As8%1CT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AATE9%FE%FCw%3E%9F%AF%2B%2F%BA%97%FDT%1D~K(%5C%9D%D5%EA%1B%5C%86%B5%A9%BDU%B5y%80%ED%AB*%03%FAV9%AB%E1%CEj%E7%82%EF%FB%18%BC%AEJ8%AB%FA'%D2%BEU9%D7U%ECc0%E1%A2r%5DynwVi%CFW%7F%BB%17%7Dy%EACU%CD%0E%F0%FA%3BX%FEbV%FEM%9B%2B%AD%BE%AA%E5%95v%AB%AA%E3E5%DCu%15rV9%07%B5%7F%B5w%FCm%BA%BE%AA%FBY%3D%14%F0%EE%C7%60%0EU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5JU%88%D3%F5%1F%AE%DF%3B%1B%F2%3E%DAUCNa%F92%D02%AC%7Dm%F9%3A%D4%F2%8B6%AE*%BF%5C%C2Ym~9g5%D0Y%95%17%7C%C8c%B0%7C%18%26%9CU%CD%13i%F7%AA%90%B3Z%7D%95%B4%C7%60%E6E%B5%BC%05%B4%FBY%95U%9E%DB%FD%1C%FC%E0%9F%83%7F%BE%17%7DkjMU%E3%03%AC%7CWj%DF%83%9An%BCG%AE%F1%95%96yQ%0Dq%5Dy%00%3Et%B5'%FC6%5DS%95pV%95%01%81%FF'%07%00%00%00%00%00%00%00%00%00%F8x%C7%F0%BE%9COp%5D%C9%7C%AD%E7%E6%EBV%FB%1E%E0(%07%E5%AC%C6%3A%ABi%9C%8F%C6%0E9%AB%C0'%D2%8E%9F%F99%D0E%B5%99%14%F5%0D%CD%7F%24%C6%DEH%B8%E9rV%DFs%DB%D0%F7%00k%FE%1D%84%84%83J%B8%E3%BA%FB%EF%20%84%1C%D7%AD%B0%8E%D7U%C8Y%05%1E%D4t%EF%AD%95Q%BF8w%BF%E9%0A%BF%EB%03%00%00%00%00%00%00%00%00%00%B8vJ%8E%BB%F5%B1u%8Cx%80%E1o%5E%CA9%AB%CB%CB%8E%03%DF%1D%B7T%25%9C%D5(%EFJM8%AB%CC'%D2%B2*%A4s%E7c6%FB%3E%FA%A2%1E%80~%0E%3E%DA%10x%5D%95Uig%15u%15%ED%7C%14%B6%87%A1%3B%FCo8%A8%D8o%D3%ADO%01%EDx%83%1A~%1B%9FpP%A3%DC%C6'%9C%95gK%00%00%00%00%00%00%00%00%00%20%D9%C9%11%D0%C0%40%AF%3F%EE%EE%92%94%D6%16X%B5%BCMH%15%2F%BF%D4%A7%C87%F1%8E%F2%81%AE%AAvzr%DA2%ABV%17%7C%E63%83%E7I%DC%C6%0Bs%1B%EF6%1E%00%00%00%00%00%00%00%00%00%80cr%9CW%FF%7F%C6%01%0E%F1%CE%A5%84%B3%CA%BC%E0%CB%AA%84%CE%F9%BF)%EC%13%08WU%AE%AB%B1%AE%2BO%EC%8E%CBYe%FE%8CN%ABr%5Dy%60~%CFA%0D%F4%AE%D4%BE%C75%CA%EDVB%EA(%B7%F1%09g%E5%D9%12%00%00%00%00%00%00%00%00%00H%F6%EB%13S%E7y%5E%5E%FB%98%F0%22%D1%B2'%A7%F0%92%B1%BC%24z3%AC%7Dm%60%D5%92%B4%7CEUO%5E%F0%AA*%3BU%B9%AE%3E%A0j%94%07%A0%C7%A0%AB%FD%B5%3F%A0%F7%03T%3Dy%D7%F7%D6%D4%C0%AAU%D2%E6%DFt%3F%A8%CC%AA%F2%86%B9%D7%F5%1F%18%E6%01%F8%CC%D5%9E%F0%F3z%88%AA%90%EF%20%00%00%00%00%00%00%00%00%00%C0%A6%D3%EA%CFi%AFb%2C%7BB%0A%2B%C3%1A%D7%06V%D5%07%A8r%5D%3D%D9%A6%CAu%F5%25%CF%A2%99%97zNX%60%95%AB%5DUZ%D5%FBR%03%AB%1C%D4k%9F%3F%BB%5C%FF%81a%AE%AB'%7F%F3%EA%FE%F3z%94%AA%D8%DF%5B%01%00%00%00%00%00%00%00%00%00%8E%FB%F3%F2%B1%1B%8DWU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*UiU%C7%BBe%E7%F3%B9%CB%AAJ%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5*%AAj%FD%C6%D4%5Eo%90%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5%86%AF%1B%9F%98%DA%EBm%BBV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%AD%D6%E4%F58%01%00%00%00%00%00%00%00%00%00%00%00%00%00%40%85%7F%02%0C%008%C2%D0H%16j%8FX%00%00%00%00IEND%AEB%60%82") repeat-x !important;
135 border-top: 1px solid #BBBBBB !important;
136 border-right: 1px dashed #BBBBBB !important;
137 border-bottom: 1px solid #000000 !important;
138 }
139
140 .firebugRulerV {
141 top: 0 !important;
142 left: -15px !important;
143 width: 14px !important;
144 height: 100% !important;
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150
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160 .fbProxyElement {
161 position: fixed !important;
162 pointer-events: auto !important;
163 }
164 </style></head>
165
166 <body id="type-a" class="noToggleCheck ">
167 <div id="wrap">
168
169
170 <div id="content-wrap">
171
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175
176 <!-- CDD info for old design -->
177
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184
185 <div id="content">
186
187 <!--<ul id="msg" class="msg"><li class="info"><p class=""></p><p class=""></p><p class=""></p></li></ul>-->
188
189
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191
192
193
194
195
196 <!-- Reformat and downlaod for new design -->
197 <!-- aria -->
198 <!-- aria -->
199 <form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST" name="overview0">
200
201
202
203 <div id="page">
204
205 <div id="summary" class="">
206 <div id="ht"></div>
207 <h1>Nucleotide Sequence (16 letters) <span id="hdTitle" class="shownInl"></span></h1>
208 <div>
209 <div id="multipleSeqs" class="hidden">
210 <label for="queryList">Results for:</label>
211 <select id="queryList" name="queryList">
212 <option value="0" selected="selected" class="">lcl|59987 None(16bp)</option>
213 </select>
214 <a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="queryInfo" title="Multiple quries help" id="queryHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
215 <span class="ui-icon ui-icon-triangle-1-e"></span></a>
216 </div><!--/#multipleSeqs"-->
217
218 <div class="ui-helper-reset" aria-live="assertive">
219 <p aria-hidden="true" id="queryInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
220 Your BLAST job specified more than one input sequence.
221 This box lets you choose which input sequence to show BLAST results for.
222 </p>
223 </div><!-- ARIA -->
224 </div>
225 <div id="summarylists">
226 <dl>
227 <dt>RID</dt>
228 <dd>
229 <a title="BLAST search request ID" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014">PHWP1JNZ014</a> (Expires on 05-07 22:33 pm)
230 </dd>
231 </dl>
232 <div id="querysummary">
233 <dl>
234 <dt>Query ID</dt>
235 <dd class="hidden">
236 <a title="Find query in Entrez" href="http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&amp;db=nucleotide&amp;term=59987&amp;dopt=GenBank" target="lnkPHWP1JNZ014">lcl|59987</a>
237 </dd>
238 <dd class="">lcl|59987</dd>
239 <dt>Description</dt>
240 <dd>None</dd>
241 <dt>Molecule type</dt>
242 <dd>nucleic acid</dd>
243 <dt>Query Length</dt>
244 <dd>16</dd>
245 </dl>
246 </div><!--/#querysummary-->
247
248 <div id="dbsummary">
249 <dl>
250 <dt> </dt><dd> </dd>
251 <dt>Database Name</dt>
252 <dd>pdb</dd>
253 <dt>Description</dt>
254 <dd>PDB nucleotide database <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="See multiple databases detailed information" class="jtg resArrowLinkB hidden jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="dbDetails" id="showDetails"><span class="ui-ncbitoggler-master-text">See details</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd> <!-- -- Database or subject info ---->
255 <dt class="xgl">Program</dt>
256 <dd class="xgl">BLASTN 2.2.29+ <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="How to cite BLAST in publications" class="resArrowLinkB hidden shown jig-ncbitoggler ui-ncbitoggler jtg ui-widget" data-ncbitoggler-toggles="refInfo" id="showRefs"><span class="ui-ncbitoggler-master-text">Citation</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd>
257 </dl>
258 </div><!--/#dbsummary-->
259 </div><!--/#summarylists -->
260 <br>
261 <div class="ui-helper-reset" aria-live="assertive">
262 <div aria-hidden="true" id="dbDetails" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
263 <!-- multiple databases or subjects table -->
264 </div>
265 </div> <!-- aria end -->
266 <div class="ui-helper-reset" aria-live="assertive">
267 <div aria-hidden="true" id="refInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
268 <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&amp;cmd=Retrieve&amp;list_uids=9254694&amp;dopt=Citation">Reference </a>
269 <div>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
270 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
271 "Gapped BLAST and PSI-BLAST: a new generation of protein database search
272 programs", Nucleic Acids Res. 25:3389-3402.</div>
273 </div> <!-- refInfo -->
274 </div> <!-- aria end -->
275
276 <div id="seealso">
277 <label>Other reports:</label>
278 <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="Show statistics" class="resArrowLinkB jtg jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="resStat" id="showStat"><span class="ui-ncbitoggler-master-text">Search Summary</span><span class="ui-icon ui-icon-triangle-1-e"></span></a>
279 <span class="xgl">
280 <a id="tax" class="hidden shown" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;RID=PHWP1JNZ014&amp;FORMAT_OBJECT=TaxBlast&amp;NCBI_GI=off&amp;DESCRIPTIONS=100&amp;ALIGNMENTS=100&amp;FORMAT_BLOCK_ON_RESPAGE=Top&amp;MASK_COLOR=1&amp;MASK_CHAR=2" target="lnkPHWP1JNZ014" title="See results arranged by taxonomy">[Taxonomy reports]</a>
281 <a href="http://www.ncbi.nlm.nih.gov/blast/treeview/treeView.cgi?request=page&amp;blastRID=PHWP1JNZ014&amp;queryID=lcl%7C59987&amp;entrezLim=&amp;ex=&amp;exl=&amp;exh=&amp;ns=100" class="" id="TreeViewlcl|59987" onclick="ViewTree('TreeViewlcl|59987');return false;" target="lnkPHWP1JNZ014" title="See a distance tree of these pairwise comparisons">[Distance tree of results]</a>
282
283
284
285 </span>
286 </div> <!-- seealso -->
287
288 <div class="ui-helper-reset" aria-live="assertive">
289 <div aria-hidden="true" id="resStat" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
290 <table id="params" class="dbInfo">
291 <caption>Search Parameters</caption>
292 <tbody><tr><th><div>Search parameter name</div></th><th><div>Search parameter value</div></th></tr>
293 <tr><td>Program</td><td>blastn</td></tr><tr><td>Word size</td><td>7</td></tr><tr><td>Expect value</td><td>1000</td></tr><tr><td>Hitlist size</td><td>100</td></tr><tr><td>Match/Mismatch scores</td><td>1,-3</td></tr><tr><td>Gapcosts</td><td>5,2</td></tr><tr><td>Filter string </td><td>F</td></tr><tr><td>Genetic Code</td><td>1</td></tr>
294 </tbody></table>
295 <table id="dbStat" class="dbInfo">
296 <caption>Database</caption>
297 <tbody><tr><th><div>Database parameter name</div></th><th><div>Database parameter value</div></th></tr>
298 <tr><td>Posted date</td><td>Apr 29, 2014 3:14 AM</td></tr>
299 <tr><td>Number of letters</td><td>885,284</td></tr>
300 <tr><td>Number of sequences</td><td>8,975</td></tr>
301 <tr><td>Entrez query</td><td>none</td></tr>
302 </tbody></table>
303
304 <table id="Kappa" class="dbInfo show xgl">
305 <caption>Karlin-Altschul statistics</caption>
306 <tbody><tr><th><div>Params</div></th><th><div>Ungapped</div></th><th><div>Gapped</div></th></tr>
307 <tr><td>Lambda</td><td>1.37406</td><td>1.37406</td></tr>
308 <tr><td>K</td><td>0.710603</td><td>0.710603</td></tr>
309 <tr><td>H</td><td>1.30725</td><td>1.30725</td></tr>
310
311 </tbody></table>
312
313
314 <table class="dbInfo show">
315 <caption>Results Statistics</caption>
316 <tbody><tr><th><div>Results Statistics parameter name</div></th><th><div>Results Statistics parameter value</div></th></tr>
317 <tr><td>Length adjustment</td><td> 11</td></tr><tr><td>Effective length of query</td><td> 5</td></tr><tr><td>Effective length of database</td><td> 786559</td></tr><tr><td>Effective search space</td><td> 3932795</td></tr><tr><td>Effective search space used</td><td> 3932795</td></tr>
318 </tbody></table>
319 <!-- Results statistics -->
320 </div> <!-- resStat -->
321 </div> <!-- aria end -->
322 </div><!--/#summary-->
323 </div><!--/#page-->
324
325
326 <div id="grView" class="hidden shown">
327 <h2 class="resArr">
328 <a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showGraphic" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="graphicInfo" title="Show/hide Graphic Summary">
329 <span class="ui-ncbitoggler-master-text">Graphic Summary</span>
330 <span class="ui-icon ui-icon-plus-minus-big-open"></span>
331 </a>
332 </h2>
333 <div class="ui-helper-reset" aria-live="assertive">
334 <div aria-hidden="false" id="graphicInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
335
336
337 <div id="graphic" class="hidden shown">
338 <h3>Distribution of 45 Blast Hits on the Query Sequence
339 <a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
340 <span class="ui-icon ui-icon-triangle-1-e"></span></a></h3>
341 <div class="ui-helper-reset" aria-live="assertive">
342 <p aria-hidden="true" id="ovrInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
343 An overview of the database sequences aligned to the query sequence is
344 shown. The score of each alignment is indicated by one of five
345 different colors, which divides the range of scores into five groups.
346 Multiple alignments on the same database sequence are connected
347 by a striped line. <span class="hl">Mousing over</span> a hit sequence causes the definition and score to be shown in the window at the top,
348 <span class="hl">clicking</span> on a hit sequence takes the user to the associated alignments.
349 New:
350 This graphic is an overview of database sequences aligned to the query sequence.
351 Alignments are color-coded by score, within one of five score ranges.
352 Multiple alignments on the same database sequence are connected by a dashed line.
353 <span class="hl">Mousing</span> over an alignment shows the alignment definition and score in the box at the top.
354 <span class="hl">Clicking</span> an alignment displays the alignment detail.
355 </p>
356 </div><!-- ARIA -->
357 <center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
358 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td>
359 </tr></tbody></table>
360 <table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table>
361 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="51"></td>
362 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
363 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
364 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
365 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
366 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
367 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
368 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
369 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
370 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
371 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
372 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
373 </tr></tbody></table>
374 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
375 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
376 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
377 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/3.gif" height="13" width="10"></td>
378 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
379 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/6.gif" height="13" width="10"></td>
380 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
381 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/9.gif" height="13" width="10"></td>
382 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="73"></td>
383 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
384 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/2.gif" height="13" width="10"></td>
385 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="73"></td>
386 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
387 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/5.gif" height="13" width="10"></td>
388 </tr></tbody></table>
389 <br><table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
390 <td align="LEFT" valign="CENTER"><a href="#557804451" onclick='DisplayAlignFromGraphics("557804451",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J5A_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
391 </tr></tbody></table>
392 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
393 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
394 <td align="LEFT" valign="CENTER"><a href="#557804395" onclick='DisplayAlignFromGraphics("557804395",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J58_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
395 </tr></tbody></table>
396 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
397 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
398 <td align="LEFT" valign="CENTER"><a href="#557804339" onclick='DisplayAlignFromGraphics("557804339",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J56_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
399 </tr></tbody></table>
400 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
401 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
402 <td align="LEFT" valign="CENTER"><a href="#557804283" onclick='DisplayAlignFromGraphics("557804283",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J54_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
403 </tr></tbody></table>
404 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
405 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
406 <td align="LEFT" valign="CENTER"><a href="#557804227" onclick='DisplayAlignFromGraphics("557804227",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J52_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
407 </tr></tbody></table>
408 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
409 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
410 <td align="LEFT" valign="CENTER"><a href="#557804195" onclick='DisplayAlignFromGraphics("557804195",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J51_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
411 </tr></tbody></table>
412 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
413 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
414 <td align="LEFT" valign="CENTER"><a href="#557804163" onclick='DisplayAlignFromGraphics("557804163",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J50_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
415 </tr></tbody></table>
416 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
417 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
418 <td align="LEFT" valign="CENTER"><a href="#557804083" onclick='DisplayAlignFromGraphics("557804083",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J4X_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
419 </tr></tbody></table>
420 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
421 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
422 <td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="250"></a></td>
423 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
424 <td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
425 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
426 <td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
427 </tr></tbody></table>
428 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
429 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
430 <td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 14" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=14 E=1.9e+02'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="219"></a></td>
431 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
432 <td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="155"></a></td>
433 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
434 <td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
435 </tr></tbody></table>
436 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
437 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
438 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="94"></td>
439 <td align="LEFT" valign="CENTER"><a href="#357380483" onclick='DisplayAlignFromGraphics("357380483",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J0O_8 Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex .. S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="281"></a></td>
440 </tr></tbody></table>
441 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
442 </td></tr></tbody></table>
443 </center><hr>
444 </div><!--/#graphic-->
445 </div><!-- graphicInfo -->
446 </div><!-- ARIA -->
447 </div>
448 <!--HITMATRIX_VIEW - only for bl2seq -->
449
450 <div id="dscrView" class="hidden shown">
451 <h2 class="resArr">
452 <a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showDescr" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="descrInfo" title="Show/hide Descriptions">
453 <span class="ui-ncbitoggler-master-text">Descriptions</span>
454 <span class="ui-icon ui-icon-plus-minus-big-open"></span>
455 </a>
456 </h2>
457 <div class="ui-helper-reset" aria-live="assertive">
458 <div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
459 <!-- legend to links to other resources -->
460 <a name="sort_mark"></a>
461
462
463 <div id="debug">, Reading indexes 1-5, displaying indexes 1-5</div>
464 <input id="Rid" value="PHWP1JNZ014" type="hidden">
465 <input id="useAlignDB" name="useAlignDB" value="" type="hidden">
466 <input id="dbType" value="GenBank" type="hidden"><!-- Indicates genbank, etc -->
467 <input id="serviceType" value="plain" type="hidden">
468 <input id="clientType" value="web" type="hidden">
469 <input id="currQuery" value="" type="hidden">
470 <input id="minDispAlnLen" value="2000" type="hidden">
471 <input id="maxDispAlnLen" value="20000" type="hidden">
472 <div class="hidden" id="dynHspTmpl"><div class="alnParLinks moreHsps" id="@moreHspsID@"><a class="gbd toolsCtr navNext" title="Load matches @segs@ out of @totalHSP@ for @accs@" onmouseover="scan(this)" ref="range=@segs@&amp;currseq=@alnSeqGi@" onclick="ReadNextHSPSet(@argstring@);"><span>Load next set</span></a><a class="gbd toolsCtr navPrev" title="Go to previous match #@aln_prev_num@ for @accs@" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a></div></div>
473 <div id="descriptions" class="blRes">
474 <!--<pre> -->
475 <div class="cap">Sequences producing significant alignments:</div>
476 <a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden">
477 Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span>
478 </a>
479 <span id="cntDesc">
480 <span>Select:<a href="#" id="cntSelA" sel="all">All</a><a href="#" id="cntSelN" sel="n">None</a></span>
481 <span>Selected:<span id="slcNum">0</span></span>
482 </span>
483
484 <div id="descTblCtrl" class="cnf">
485 <a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a>
486 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a>
487
488 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsDownload" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
489 <div class=""><input name="dwn" checked="checked" id="dwFST" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST">FASTA (complete sequence)</label></div>
490 <div class=""><input name="dwn" id="dwFSTAl" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl">FASTA (aligned sequences)</label></div>
491 <div class=""><input name="dwn" id="dwGenBank" getgi="on" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class=" shownInl" for="dwGenBank">GenBank (complete sequence)</label></div>
492 <div><input name="dwn" id="dwHitText" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get" type="radio"><label class="shownInl" for="dwHitText">Hit Table (text)</label></div>
493 <div><input name="dwn" id="dwHitCsv" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=CSV&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get" type="radio"><label class="shownInl" for="dwHitCsv">Hit Table (CSV)</label></div>
494 <div><input name="dwn" id="dwText" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwText">Text</label></div>
495 <div><input name="dwn" id="dwXML" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=XML&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwXML">XML</label></div>
496 <div><input name="dwn" id="dwASN" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=ASN.1&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwASN">ASN.1</label></div>
497 <div>
498 <button class="cfg" id="dw_cont">Continue</button>
499 <button class="cfg cnc">Cancel</button>
500 </div>
501 </div> <!-- dsDownload -->
502
503
504
505
506
507 <a href="#" class="toolsCtr" minslct="1" view="dflt" frm="submitterTop" seqlist="selSeqs" title="See genbank report for selected sequences" disabled="disabled">GenBank</a> <!-- genbank or Traces -->
508 <a href="#" class="toolsCtr " minslct="1" view="graph" title="See graphic representation for selected sequences" disabled="disabled">Graphics</a>
509 <a href="#" class="toolsCtr hidden shown" view="tree" minslct="1" frm="sbmtTreeView" seqlist="selSeqsTr" disabled="disabled" title="See a distance tree of pairwise comparisons for the selected sequences">Distance tree of results</a>
510 <a href="#" class="toolsCtr hidden " view="dflt" minslct="2" frm="sbmtMultiAln" seqlist="selSeqsMl" disabled="disabled" title="See multple alignment of query and target sequences for the selected sequences with expect value better than 0.001">Multiple alignment</a>
511
512 <a aria-haspopup="true" aria-expanded="false" role="button" class="jig-ncbipopper button_config" title="Show/hide columns" id="button_config" href="#dsConfig"><span class="accsb">Show/hide columns of the table presenting sequences producing significant alignments </span></a>
513
514 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsConfig" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
515 <div class="tl">Available columns</div>
516 <input checked="checked" id="chkDs" value="2" type="checkbox"><label class="shownInl" for="chkDs">Description</label><br>
517 <input checked="checked" id="chkMS" value="3" type="checkbox"><label class="shownInl" for="chkMs">Max Score</label><br>
518 <input checked="checked" id="chkTS" value="4" type="checkbox"><label class="shownInl" for="chkTs">Total Score</label><br>
519 <input checked="checked" id="chkCov" value="5" type="checkbox"><label class="shownInl" for="chkCov">Coverage</label><br>
520 <input checked="checked" id="chkEval" value="6" type="checkbox"><label class="shownInl" for="chkEval">E-value</label><br>
521 <input checked="checked" id="chkIdnt" value="7" type="checkbox"><label class="shownInl" for="chkIdnt"><span class="">Ident</span><span class="hidden">N</span></label><br>
522 <input checked="checked" id="chkAcc" value="8" type="checkbox"><label class="shownInl" for="chkAcc">Accession</label><br>
523 <button class="cfg rdf" id="dscRsDf">Restore Defaults</button>
524 <button class="cfg" id="dscOk">Ok</button>
525 <button class="cfg cnc" id="dscCnc">Cancel</button>
526 </div> <!-- dsConfig -->
527
528 <input id="cfcDsInf" defval="2,3,4,5,6,7,8" value="2,3,4,5,6,7,8" type="hidden">
529 </div>
530 <div class="ui-ncbigrid-outer-div caption-exists">
531 <div class="ui-ncbigrid-inner-div">
532 <table id="dscTable" class="jig-ncbigrid ui-ncbigrid" data-jigconfig="" cellpadding="0" cellspacing="0">
533 <caption class="hdnHeader">Sequences producing significant alignments:</caption>
534 <thead>
535 <tr class="first">
536 <th class="c0" id="c0"><span>Select for downloading or viewing reports</span></th>
537 <th class="dflnDth c2" id="c2">Description</th>
538 <th class=" c3" id="c3">
539
540 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=1&amp;HSP_SORT=1" class="dcs" title="Sort by max score">Max score</a>
541 </th>
542 <th class=" c4" id="c4">
543 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=2&amp;HSP_SORT=1" class="dcs" title="Sort by total score">Total score</a>
544 </th>
545 <th class=" c5" id="c5">
546 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=4&amp;HSP_SORT=0" class="dcs" title="Sort by query coverage">Query cover</a>
547 </th>
548 <th class="sel c6" id="c6">
549 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=0&amp;HSP_SORT=0" class="dcs" title="Sort by E value">E value</a>
550 </th>
551 <th class="c7" id="c7">
552 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;DISPLAY_SORT=3&amp;HSP_SORT=3" class="dcs" title="Sort by ident">Ident</a>
553 </th>
554
555 <th class="c1" id="c8">Accession</th>
556 </tr>
557 </thead>
558 <tbody>
559 <tr id="dtr_557804451" ind="1" class="odd dflLnk">
560 <td class="l c0"><span class="ind">1</span><input id="chk_1" class="cb" name="getSeqGi" value="557804451" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_1" class="accsb">Select seq pdb|3J5A|A</label></td>
561 <td class="lim l c2">
562 <div class="lim n">
563 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="1" accs="pdb|3J5A|A" seqfsta="gi|557804451" gi="557804451" seqid="557804451" id="deflnDesc_1" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804451">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)</a>
564 </div>
565 </td>
566 <td class="c3">32.2</td>
567 <td class="c4">77.3</td>
568 <td class="c5">100%</td>
569 <td class="c6">8e-04</td><td class="c7">100%</td>
570 <td class="c1 l lim">
571 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nucltop&amp;blast_rank=1&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J5A_A">3J5A_A</a>
572 </td>
573 </tr><tr id="dtr_557804395" ind="2" class="even dflLnk">
574 <td class="l c0"><span class="ind">2</span><input id="chk_2" class="cb" name="getSeqGi" value="557804395" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_2" class="accsb">Select seq pdb|3J58|A</label></td>
575 <td class="lim l c2">
576 <div class="lim n">
577 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="2" accs="pdb|3J58|A" seqfsta="gi|557804395" gi="557804395" seqid="557804395" id="deflnDesc_2" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804395">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)</a>
578 </div>
579 </td>
580 <td class="c3">32.2</td>
581 <td class="c4">77.3</td>
582 <td class="c5">100%</td>
583 <td class="c6">8e-04</td><td class="c7">100%</td>
584 <td class="c1 l lim">
585 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nucltop&amp;blast_rank=2&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J58_A">3J58_A</a>
586 </td>
587 </tr><tr id="dtr_557804339" ind="3" class="odd dflLnk">
588 <td class="l c0"><span class="ind">3</span><input id="chk_3" class="cb" name="getSeqGi" value="557804339" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_3" class="accsb">Select seq pdb|3J56|A</label></td>
589 <td class="lim l c2">
590 <div class="lim n">
591 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="3" accs="pdb|3J56|A" seqfsta="gi|557804339" gi="557804339" seqid="557804339" id="deflnDesc_3" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804339">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)</a>
592 </div>
593 </td>
594 <td class="c3">32.2</td>
595 <td class="c4">77.3</td>
596 <td class="c5">100%</td>
597 <td class="c6">8e-04</td><td class="c7">100%</td>
598 <td class="c1 l lim">
599 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nucltop&amp;blast_rank=3&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J56_A">3J56_A</a>
600 </td>
601 </tr><tr id="dtr_557804283" ind="4" class="even dflLnk">
602 <td class="l c0"><span class="ind">4</span><input id="chk_4" class="cb" name="getSeqGi" value="557804283" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_4" class="accsb">Select seq pdb|3J54|A</label></td>
603 <td class="lim l c2">
604 <div class="lim n">
605 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="4" accs="pdb|3J54|A" seqfsta="gi|557804283" gi="557804283" seqid="557804283" id="deflnDesc_4" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804283">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)</a>
606 </div>
607 </td>
608 <td class="c3">32.2</td>
609 <td class="c4">77.3</td>
610 <td class="c5">100%</td>
611 <td class="c6">8e-04</td><td class="c7">100%</td>
612 <td class="c1 l lim">
613 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nucltop&amp;blast_rank=4&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J54_A">3J54_A</a>
614 </td>
615 </tr><tr id="dtr_557804227" ind="5" class="odd dflLnk">
616 <td class="l c0"><span class="ind">5</span><input id="chk_5" class="cb" name="getSeqGi" value="557804227" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_5" class="accsb">Select seq pdb|3J52|A</label></td>
617 <td class="lim l c2">
618 <div class="lim n">
619 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="5" accs="pdb|3J52|A" seqfsta="gi|557804227" gi="557804227" seqid="557804227" id="deflnDesc_5" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804227">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)</a>
620 </div>
621 </td>
622 <td class="c3">32.2</td>
623 <td class="c4">77.3</td>
624 <td class="c5">100%</td>
625 <td class="c6">8e-04</td><td class="c7">100%</td>
626 <td class="c1 l lim">
627 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nucltop&amp;blast_rank=5&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J52_A">3J52_A</a>
628 </td>
629 </tr><tr id="dtr_557804195" ind="6" class="even dflLnk">
630 <td class="l c0"><span class="ind">6</span><input id="chk_6" class="cb" name="getSeqGi" value="557804195" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_6" class="accsb">Select seq pdb|3J51|A</label></td>
631 <td class="lim l c2">
632 <div class="lim n">
633 <a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="6" accs="pdb|3J51|A" seqfsta="gi|557804195" gi="557804195" seqid="557804195" id="deflnDesc_6" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804195">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)</a>
634 </div>
635 </td>
636 <td class="c3">32.2</td>
637 <td class="c4">77.3</td>
638 <td class="c5">100%</td>
639 <td class="c6">8e-04</td><td class="c7">100%</td>
640 <td class="c1 l lim">
641 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804195?report=genbank&amp;log$=nucltop&amp;blast_rank=6&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J51_A">3J51_A</a>
642 </td>
643 </tr><tr id="dtr_557804163" ind="7" class="odd dflLnk">
644 <td class="l c0"><span class="ind">7</span><input id="chk_7" class="cb" name="getSeqGi" value="557804163" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_7" class="accsb">Select seq pdb|3J50|A</label></td>
645 <td class="lim l c2">
646 <div class="lim n">
647 <a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="7" accs="pdb|3J50|A" seqfsta="gi|557804163" gi="557804163" seqid="557804163" id="deflnDesc_7" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804163">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)</a>
648 </div>
649 </td>
650 <td class="c3">32.2</td>
651 <td class="c4">77.3</td>
652 <td class="c5">100%</td>
653 <td class="c6">8e-04</td><td class="c7">100%</td>
654 <td class="c1 l lim">
655 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804163?report=genbank&amp;log$=nucltop&amp;blast_rank=7&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J50_A">3J50_A</a>
656 </td>
657 </tr><tr id="dtr_557804083" ind="8" class="even dflLnk">
658 <td class="l c0"><span class="ind">8</span><input id="chk_8" class="cb" name="getSeqGi" value="557804083" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_8" class="accsb">Select seq pdb|3J4X|A</label></td>
659 <td class="lim l c2">
660 <div class="lim n">
661 <a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="8" accs="pdb|3J4X|A" seqfsta="gi|557804083" gi="557804083" seqid="557804083" id="deflnDesc_8" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804083">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)</a>
662 </div>
663 </td>
664 <td class="c3">32.2</td>
665 <td class="c4">77.3</td>
666 <td class="c5">100%</td>
667 <td class="c6">8e-04</td><td class="c7">100%</td>
668 <td class="c1 l lim">
669 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804083?report=genbank&amp;log$=nucltop&amp;blast_rank=8&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J4X_A">3J4X_A</a>
670 </td>
671 </tr><tr id="dtr_485601478" ind="9" class="odd dflLnk">
672 <td class="l c0"><span class="ind">9</span><input id="chk_9" class="cb" name="getSeqGi" value="485601478" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_9" class="accsb">Select seq pdb|3J3F|5</label></td>
673 <td class="lim l c2">
674 <div class="lim n">
675 <a title="Go to alignment for Chain 5, Structure Of The H. Sapiens 60s Rrna" class="deflnDesc" hsp="8" len="63" ind="9" accs="pdb|3J3F|5" seqfsta="gi|485601478" gi="485601478" seqid="485601478" id="deflnDesc_9" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601478">Chain 5, Structure Of The H. Sapiens 60s Rrna</a>
676 </div>
677 </td>
678 <td class="c3">18.3</td>
679 <td class="c4"> 128</td>
680 <td class="c5">100%</td>
681 <td class="c6"> 12</td><td class="c7">100%</td>
682 <td class="c1 l lim">
683 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601478?report=genbank&amp;log$=nucltop&amp;blast_rank=9&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3F_5">3J3F_5</a>
684 </td>
685 </tr><tr id="dtr_485601474" ind="10" class="even dflLnk">
686 <td class="l c0"><span class="ind">10</span><input id="chk_10" class="cb" name="getSeqGi" value="485601474" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_10" class="accsb">Select seq pdb|3J3E|5</label></td>
687 <td class="lim l c2">
688 <div class="lim n">
689 <a title="Go to alignment for Chain 5, Structure Of The D. Melanogaster 60s Rrna" class="deflnDesc" hsp="4" len="31" ind="10" accs="pdb|3J3E|5" seqfsta="gi|485601474" gi="485601474" seqid="485601474" id="deflnDesc_10" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601474">Chain 5, Structure Of The D. Melanogaster 60s Rrna</a>
690 </div>
691 </td>
692 <td class="c3">18.3</td>
693 <td class="c4">63.4</td>
694 <td class="c5">100%</td>
695 <td class="c6"> 12</td><td class="c7">100%</td>
696 <td class="c1 l lim">
697 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601474?report=genbank&amp;log$=nucltop&amp;blast_rank=10&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3E_5">3J3E_5</a>
698 </td>
699 </tr><tr id="dtr_357380483" ind="11" class="odd dflLnk">
700 <td class="l c0"><span class="ind">11</span><input id="chk_11" class="cb" name="getSeqGi" value="357380483" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_11" class="accsb">Select seq pdb|3J0O|8</label></td>
701 <td class="lim l c2">
702 <div class="lim n">
703 <a title="Go to alignment for Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2" class="deflnDesc" hsp="1" len="9" ind="11" accs="pdb|3J0O|8" seqfsta="gi|357380483" gi="357380483" seqid="357380483" id="deflnDesc_11" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_357380483">Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2</a>
704 </div>
705 </td>
706 <td class="c3">18.3</td>
707 <td class="c4">18.3</td>
708 <td class="c5">56%</td>
709 <td class="c6"> 12</td><td class="c7">100%</td>
710 <td class="c1 l lim">
711 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/357380483?report=genbank&amp;log$=nucltop&amp;blast_rank=11&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J0O_8">3J0O_8</a>
712 </td>
713 </tr>
714 </tbody>
715 </table>
716 </div></div>
717 <!--</pre> -->
718 </div><!--/#descriptions-->
719 </div><!-- descrInfo -->
720 </div><!--ARIA-->
721 </div>
722 </form><!-- this is the end tag for the <form in blastcgi templates -->
723
724
725
726
727
728 <!-- used in redesign -->
729
730 <div id="alignView" class=" ">
731 <h2 class="resArr">
732 <a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showAlign" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="alignInfo" title="Show/hide Alignments">
733 <span class="ui-ncbitoggler-master-text">Alignments</span>
734 <span class="ui-icon ui-icon-plus-minus-big-open"></span>
735 </a>
736 </h2>
737
738 <div class="ui-helper-reset" aria-live="assertive">
739 <div aria-hidden="false" id="alignInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
740 <div id="alignments" class="blRes">
741 <span id="alnStart"></span><div seqlist="gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227" indexes="1-5" id="alnShow_1" class="alnMsg"><div class="alnMsgS hidden" id="alnMsg_1">Loading alignment...<span class="db"> for sequences gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227 Reading indexes 1-5</span></div><div id="alnShowReal_1" class="alnMsgR"><form name="getSeqAlignment1">
742 <div class="alnHdr cnf" id="alnHdr_557804451" seqid="557804451" accs="pdb|3J5A|A">
743 <a name="557804451"></a>
744 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804451" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804451" title="Download information for pdb|3J5A|A"><span>Download</span></a>
745 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804451" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
746 <div><input seqfsta="gi|557804451" name="dwn_557804451" checked="checked" id="dwFST_557804451" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804451">FASTA (complete sequence)</label></div>
747 <div><input seqfsta="gi|557804451" name="dwn_557804451" id="dwFSTAl_557804451" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804451">FASTA (aligned sequences)</label></div>
748 <div class=""><input name="dwn_557804451" id="dwGenBank_557804451" getgi="557804451" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804451">GenBank (complete sequence)</label></div>
749 <div>
750 <button class="cfg" id="dw_cont_557804451">Continue</button>
751 <button class="cfg cnc">Cancel</button>
752 </div>
753 </div> <!-- dsDownload -->
754 <span class="csLinks" id="csLinks_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics">Graphics</a></span>
755
756 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
757 <select id="sa_557804451" onchange="SortHSPAlnSel(event,this)">
758 <option selected="selected" value="0">E value</option>
759 <option value="1"> Score</option>
760 <option value="3">Percent identity</option>
761 <option value="2">Query start position</option>
762 <option value="4">Subject start position</option>
763 </select>
764 </div>
765 <span class="alnSeqLinks">
766 <a title="Go to next alignment for pdb|3J58|A" class="gbd toolsCtr navNext" ref="ordinalpos=1&amp;currseq=557804451" id="alnNxt_557804451" onclick="goToNextAlign('dtr_557804451',true);"><span>Next</span></a>
767 <a disabled="disabled" class="gbd toolsCtr navPrev" ref="ordinalpos=1&amp;currseq=557804451" id="alnPrv_557804451" onclick="goToNextAlign('dtr_557804451',false);"><span>Previous</span></a>
768 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J5A|A" id="alnDsc_557804451" onclick="goToDefLine('dtr_557804451');" href="#dtr_557804451"><span>Descriptions</span></a>
769 </span>
770 </div>
771 <div class="oneSeqAln" id="aln_557804451">
772 <div id="dln_557804451">
773 <div class="dlfRow">
774 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)
775 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J5A|A">pdb|3J5A|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
776 </div>
777 </div>
778 <div class="relInf" id="relInf_557804451"><label>Related Information</label></div>
779 <!--
780 <pre>
781 <@aln_gene_info@>
782 </pre>
783 -->
784 <div class="alnAll" id="alnAll_557804451"><div id="hd_557804451_1">
785 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
786 <span id="hsp557804451_1" class="alnParLinks">
787 <a init="on" class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
788 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
789 <a class="gbd toolsCtr navBack hidden" href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
790 </span>
791 </div>
792 <table class="alnParams">
793 <caption class="hdnHeader">Alignment statistics for match #1</caption>
794 <tbody><tr>
795 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
796 </tr>
797 <tr>
798 <td>32.2 bits(16)</td>
799 <td>8e-04<span class="sumN ">()</span></td>
800 <td>16/16(100%)</td>
801 <td>0/16(0%)</td>
802 <td>Plus/Plus</td>
803 <td class="aln_frame "></td>
804 </tr></tbody></table>
805 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
806 </div>
807 <div id="ar_557804451_1">
808 <pre>Query 1 CGTCCGTCGTGAAGAG 16
809 ||||||||||||||||
810 Sbjct 961 CGTCCGTCGTGAAGAG 976
811
812
813 </pre>
814 </div>
815 <div id="hd_557804451_2">
816 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
817 <span id="hsp557804451_2" class="alnParLinks">
818 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
819 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
820 <a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
821 </span>
822 </div>
823 <table class="alnParams">
824 <caption class="hdnHeader">Alignment statistics for match #2</caption>
825 <tbody><tr>
826 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
827 </tr>
828 <tr>
829 <td>16.4 bits(8)</td>
830 <td> 47<span class="sumN ">()</span></td>
831 <td>8/8(100%)</td>
832 <td>0/8(0%)</td>
833 <td>Plus/Plus</td>
834 <td class="aln_frame "></td>
835 </tr></tbody></table>
836 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
837 </div>
838 <div id="ar_557804451_2">
839 <pre>Query 5 CGTCGTGA 12
840 ||||||||
841 Sbjct 2591 CGTCGTGA 2598
842
843
844 </pre>
845 </div>
846 <div id="hd_557804451_3">
847 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
848 <span id="hsp557804451_3" class="alnParLinks">
849 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
850 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
851 <a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
852 </span>
853 </div>
854 <table class="alnParams">
855 <caption class="hdnHeader">Alignment statistics for match #3</caption>
856 <tbody><tr>
857 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
858 </tr>
859 <tr>
860 <td>14.4 bits(7)</td>
861 <td> 186<span class="sumN ">()</span></td>
862 <td>7/7(100%)</td>
863 <td>0/7(0%)</td>
864 <td>Plus/Plus</td>
865 <td class="aln_frame "></td>
866 </tr></tbody></table>
867 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
868 </div>
869 <div id="ar_557804451_3">
870 <pre>Query 7 TCGTGAA 13
871 |||||||
872 Sbjct 839 TCGTGAA 845
873
874
875 </pre>
876 </div>
877 <div id="hd_557804451_4">
878 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
879 <span id="hsp557804451_4" class="alnParLinks">
880 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
881 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
882 <a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
883 </span>
884 </div>
885 <table class="alnParams">
886 <caption class="hdnHeader">Alignment statistics for match #4</caption>
887 <tbody><tr>
888 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
889 </tr>
890 <tr>
891 <td>14.4 bits(7)</td>
892 <td> 186<span class="sumN ">()</span></td>
893 <td>7/7(100%)</td>
894 <td>0/7(0%)</td>
895 <td>Plus/Plus</td>
896 <td class="aln_frame "></td>
897 </tr></tbody></table>
898 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
899 </div>
900 <div id="ar_557804451_4">
901 <pre>Query 9 GTGAAGA 15
902 |||||||
903 Sbjct 2027 GTGAAGA 2033
904
905
906 </pre>
907 </div>
908 </div> <!-- alnAll_557804451 -->
909 </div> <!-- aln_557804451 -->
910 <div class="alnHdr cnf" id="alnHdr_557804395" seqid="557804395" accs="pdb|3J58|A">
911 <a name="557804395"></a>
912 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804395" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804395" title="Download information for pdb|3J58|A"><span>Download</span></a>
913 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804395" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
914 <div><input seqfsta="gi|557804395" name="dwn_557804395" checked="checked" id="dwFST_557804395" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804395">FASTA (complete sequence)</label></div>
915 <div><input seqfsta="gi|557804395" name="dwn_557804395" id="dwFSTAl_557804395" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804395">FASTA (aligned sequences)</label></div>
916 <div class=""><input name="dwn_557804395" id="dwGenBank_557804395" getgi="557804395" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804395">GenBank (complete sequence)</label></div>
917 <div>
918 <button class="cfg" id="dw_cont_557804395">Continue</button>
919 <button class="cfg cnc">Cancel</button>
920 </div>
921 </div> <!-- dsDownload -->
922 <span class="csLinks" id="csLinks_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics">Graphics</a></span>
923
924 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
925 <select id="sa_557804395" onchange="SortHSPAlnSel(event,this)">
926 <option selected="selected" value="0">E value</option>
927 <option value="1"> Score</option>
928 <option value="3">Percent identity</option>
929 <option value="2">Query start position</option>
930 <option value="4">Subject start position</option>
931 </select>
932 </div>
933 <span class="alnSeqLinks">
934 <a title="Go to next alignment for pdb|3J56|A" class="gbd toolsCtr navNext" ref="ordinalpos=2&amp;currseq=557804395" id="alnNxt_557804395" onclick="goToNextAlign('dtr_557804395',true);"><span>Next</span></a>
935 <a title="Go to previous alignment for pdb|3J5A|A" class="gbd toolsCtr navPrev" ref="ordinalpos=2&amp;currseq=557804395" id="alnPrv_557804395" onclick="goToNextAlign('dtr_557804395',false);"><span>Previous</span></a>
936 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J58|A" id="alnDsc_557804395" onclick="goToDefLine('dtr_557804395');" href="#dtr_557804395"><span>Descriptions</span></a>
937 </span>
938 </div>
939 <div class="oneSeqAln" id="aln_557804395">
940 <div id="dln_557804395">
941 <div class="dlfRow">
942 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)
943 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J58|A">pdb|3J58|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
944 </div>
945 </div>
946 <div class="relInf" id="relInf_557804395"><label>Related Information</label></div>
947 <!--
948 <pre>
949 <@aln_gene_info@>
950 </pre>
951 -->
952 <div class="alnAll" id="alnAll_557804395"><div id="hd_557804395_1">
953 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
954 <span id="hsp557804395_1" class="alnParLinks">
955 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
956 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
957 <a class="gbd toolsCtr navBack hidden" href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
958 </span>
959 </div>
960 <table class="alnParams">
961 <caption class="hdnHeader">Alignment statistics for match #1</caption>
962 <tbody><tr>
963 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
964 </tr>
965 <tr>
966 <td>32.2 bits(16)</td>
967 <td>8e-04<span class="sumN ">()</span></td>
968 <td>16/16(100%)</td>
969 <td>0/16(0%)</td>
970 <td>Plus/Plus</td>
971 <td class="aln_frame "></td>
972 </tr></tbody></table>
973 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
974 </div>
975 <div id="ar_557804395_1">
976 <pre>Query 1 CGTCCGTCGTGAAGAG 16
977 ||||||||||||||||
978 Sbjct 961 CGTCCGTCGTGAAGAG 976
979
980
981 </pre>
982 </div>
983 <div id="hd_557804395_2">
984 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
985 <span id="hsp557804395_2" class="alnParLinks">
986 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
987 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
988 <a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
989 </span>
990 </div>
991 <table class="alnParams">
992 <caption class="hdnHeader">Alignment statistics for match #2</caption>
993 <tbody><tr>
994 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
995 </tr>
996 <tr>
997 <td>16.4 bits(8)</td>
998 <td> 47<span class="sumN ">()</span></td>
999 <td>8/8(100%)</td>
1000 <td>0/8(0%)</td>
1001 <td>Plus/Plus</td>
1002 <td class="aln_frame "></td>
1003 </tr></tbody></table>
1004 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1005 </div>
1006 <div id="ar_557804395_2">
1007 <pre>Query 5 CGTCGTGA 12
1008 ||||||||
1009 Sbjct 2591 CGTCGTGA 2598
1010
1011
1012 </pre>
1013 </div>
1014 <div id="hd_557804395_3">
1015 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
1016 <span id="hsp557804395_3" class="alnParLinks">
1017 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1018 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1019 <a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
1020 </span>
1021 </div>
1022 <table class="alnParams">
1023 <caption class="hdnHeader">Alignment statistics for match #3</caption>
1024 <tbody><tr>
1025 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1026 </tr>
1027 <tr>
1028 <td>14.4 bits(7)</td>
1029 <td> 186<span class="sumN ">()</span></td>
1030 <td>7/7(100%)</td>
1031 <td>0/7(0%)</td>
1032 <td>Plus/Plus</td>
1033 <td class="aln_frame "></td>
1034 </tr></tbody></table>
1035 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1036 </div>
1037 <div id="ar_557804395_3">
1038 <pre>Query 7 TCGTGAA 13
1039 |||||||
1040 Sbjct 839 TCGTGAA 845
1041
1042
1043 </pre>
1044 </div>
1045 <div id="hd_557804395_4">
1046 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
1047 <span id="hsp557804395_4" class="alnParLinks">
1048 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1049 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1050 <a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
1051 </span>
1052 </div>
1053 <table class="alnParams">
1054 <caption class="hdnHeader">Alignment statistics for match #4</caption>
1055 <tbody><tr>
1056 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1057 </tr>
1058 <tr>
1059 <td>14.4 bits(7)</td>
1060 <td> 186<span class="sumN ">()</span></td>
1061 <td>7/7(100%)</td>
1062 <td>0/7(0%)</td>
1063 <td>Plus/Plus</td>
1064 <td class="aln_frame "></td>
1065 </tr></tbody></table>
1066 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1067 </div>
1068 <div id="ar_557804395_4">
1069 <pre>Query 9 GTGAAGA 15
1070 |||||||
1071 Sbjct 2027 GTGAAGA 2033
1072
1073
1074 </pre>
1075 </div>
1076 </div> <!-- alnAll_557804395 -->
1077 </div> <!-- aln_557804395 -->
1078 <div class="alnHdr cnf" id="alnHdr_557804339" seqid="557804339" accs="pdb|3J56|A">
1079 <a name="557804339"></a>
1080 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804339" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804339" title="Download information for pdb|3J56|A"><span>Download</span></a>
1081 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804339" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
1082 <div><input seqfsta="gi|557804339" name="dwn_557804339" checked="checked" id="dwFST_557804339" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804339">FASTA (complete sequence)</label></div>
1083 <div><input seqfsta="gi|557804339" name="dwn_557804339" id="dwFSTAl_557804339" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804339">FASTA (aligned sequences)</label></div>
1084 <div class=""><input name="dwn_557804339" id="dwGenBank_557804339" getgi="557804339" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804339">GenBank (complete sequence)</label></div>
1085 <div>
1086 <button class="cfg" id="dw_cont_557804339">Continue</button>
1087 <button class="cfg cnc">Cancel</button>
1088 </div>
1089 </div> <!-- dsDownload -->
1090 <span class="csLinks" id="csLinks_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics">Graphics</a></span>
1091
1092 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
1093 <select id="sa_557804339" onchange="SortHSPAlnSel(event,this)">
1094 <option selected="selected" value="0">E value</option>
1095 <option value="1"> Score</option>
1096 <option value="3">Percent identity</option>
1097 <option value="2">Query start position</option>
1098 <option value="4">Subject start position</option>
1099 </select>
1100 </div>
1101 <span class="alnSeqLinks">
1102 <a title="Go to next alignment for pdb|3J54|A" class="gbd toolsCtr navNext" ref="ordinalpos=3&amp;currseq=557804339" id="alnNxt_557804339" onclick="goToNextAlign('dtr_557804339',true);"><span>Next</span></a>
1103 <a title="Go to previous alignment for pdb|3J58|A" class="gbd toolsCtr navPrev" ref="ordinalpos=3&amp;currseq=557804339" id="alnPrv_557804339" onclick="goToNextAlign('dtr_557804339',false);"><span>Previous</span></a>
1104 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J56|A" id="alnDsc_557804339" onclick="goToDefLine('dtr_557804339');" href="#dtr_557804339"><span>Descriptions</span></a>
1105 </span>
1106 </div>
1107 <div class="oneSeqAln" id="aln_557804339">
1108 <div id="dln_557804339">
1109 <div class="dlfRow">
1110 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)
1111 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J56|A">pdb|3J56|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
1112 </div>
1113 </div>
1114 <div class="relInf" id="relInf_557804339"><label>Related Information</label></div>
1115 <!--
1116 <pre>
1117 <@aln_gene_info@>
1118 </pre>
1119 -->
1120 <div class="alnAll" id="alnAll_557804339"><div id="hd_557804339_1">
1121 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
1122 <span id="hsp557804339_1" class="alnParLinks">
1123 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1124 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1125 <a class="gbd toolsCtr navBack hidden" href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
1126 </span>
1127 </div>
1128 <table class="alnParams">
1129 <caption class="hdnHeader">Alignment statistics for match #1</caption>
1130 <tbody><tr>
1131 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1132 </tr>
1133 <tr>
1134 <td>32.2 bits(16)</td>
1135 <td>8e-04<span class="sumN ">()</span></td>
1136 <td>16/16(100%)</td>
1137 <td>0/16(0%)</td>
1138 <td>Plus/Plus</td>
1139 <td class="aln_frame "></td>
1140 </tr></tbody></table>
1141 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1142 </div>
1143 <div id="ar_557804339_1">
1144 <pre>Query 1 CGTCCGTCGTGAAGAG 16
1145 ||||||||||||||||
1146 Sbjct 961 CGTCCGTCGTGAAGAG 976
1147
1148
1149 </pre>
1150 </div>
1151 <div id="hd_557804339_2">
1152 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
1153 <span id="hsp557804339_2" class="alnParLinks">
1154 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1155 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1156 <a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
1157 </span>
1158 </div>
1159 <table class="alnParams">
1160 <caption class="hdnHeader">Alignment statistics for match #2</caption>
1161 <tbody><tr>
1162 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1163 </tr>
1164 <tr>
1165 <td>16.4 bits(8)</td>
1166 <td> 47<span class="sumN ">()</span></td>
1167 <td>8/8(100%)</td>
1168 <td>0/8(0%)</td>
1169 <td>Plus/Plus</td>
1170 <td class="aln_frame "></td>
1171 </tr></tbody></table>
1172 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1173 </div>
1174 <div id="ar_557804339_2">
1175 <pre>Query 5 CGTCGTGA 12
1176 ||||||||
1177 Sbjct 2591 CGTCGTGA 2598
1178
1179
1180 </pre>
1181 </div>
1182 <div id="hd_557804339_3">
1183 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
1184 <span id="hsp557804339_3" class="alnParLinks">
1185 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1186 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1187 <a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
1188 </span>
1189 </div>
1190 <table class="alnParams">
1191 <caption class="hdnHeader">Alignment statistics for match #3</caption>
1192 <tbody><tr>
1193 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1194 </tr>
1195 <tr>
1196 <td>14.4 bits(7)</td>
1197 <td> 186<span class="sumN ">()</span></td>
1198 <td>7/7(100%)</td>
1199 <td>0/7(0%)</td>
1200 <td>Plus/Plus</td>
1201 <td class="aln_frame "></td>
1202 </tr></tbody></table>
1203 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1204 </div>
1205 <div id="ar_557804339_3">
1206 <pre>Query 7 TCGTGAA 13
1207 |||||||
1208 Sbjct 839 TCGTGAA 845
1209
1210
1211 </pre>
1212 </div>
1213 <div id="hd_557804339_4">
1214 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
1215 <span id="hsp557804339_4" class="alnParLinks">
1216 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1217 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1218 <a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
1219 </span>
1220 </div>
1221 <table class="alnParams">
1222 <caption class="hdnHeader">Alignment statistics for match #4</caption>
1223 <tbody><tr>
1224 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1225 </tr>
1226 <tr>
1227 <td>14.4 bits(7)</td>
1228 <td> 186<span class="sumN ">()</span></td>
1229 <td>7/7(100%)</td>
1230 <td>0/7(0%)</td>
1231 <td>Plus/Plus</td>
1232 <td class="aln_frame "></td>
1233 </tr></tbody></table>
1234 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1235 </div>
1236 <div id="ar_557804339_4">
1237 <pre>Query 9 GTGAAGA 15
1238 |||||||
1239 Sbjct 2027 GTGAAGA 2033
1240
1241
1242 </pre>
1243 </div>
1244 </div> <!-- alnAll_557804339 -->
1245 </div> <!-- aln_557804339 -->
1246 <div class="alnHdr cnf" id="alnHdr_557804283" seqid="557804283" accs="pdb|3J54|A">
1247 <a name="557804283"></a>
1248 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804283" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804283" title="Download information for pdb|3J54|A"><span>Download</span></a>
1249 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804283" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
1250 <div><input seqfsta="gi|557804283" name="dwn_557804283" checked="checked" id="dwFST_557804283" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804283">FASTA (complete sequence)</label></div>
1251 <div><input seqfsta="gi|557804283" name="dwn_557804283" id="dwFSTAl_557804283" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804283">FASTA (aligned sequences)</label></div>
1252 <div class=""><input name="dwn_557804283" id="dwGenBank_557804283" getgi="557804283" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804283">GenBank (complete sequence)</label></div>
1253 <div>
1254 <button class="cfg" id="dw_cont_557804283">Continue</button>
1255 <button class="cfg cnc">Cancel</button>
1256 </div>
1257 </div> <!-- dsDownload -->
1258 <span class="csLinks" id="csLinks_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics">Graphics</a></span>
1259
1260 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
1261 <select id="sa_557804283" onchange="SortHSPAlnSel(event,this)">
1262 <option selected="selected" value="0">E value</option>
1263 <option value="1"> Score</option>
1264 <option value="3">Percent identity</option>
1265 <option value="2">Query start position</option>
1266 <option value="4">Subject start position</option>
1267 </select>
1268 </div>
1269 <span class="alnSeqLinks">
1270 <a title="Go to next alignment for pdb|3J52|A" class="gbd toolsCtr navNext" ref="ordinalpos=4&amp;currseq=557804283" id="alnNxt_557804283" onclick="goToNextAlign('dtr_557804283',true);"><span>Next</span></a>
1271 <a title="Go to previous alignment for pdb|3J56|A" class="gbd toolsCtr navPrev" ref="ordinalpos=4&amp;currseq=557804283" id="alnPrv_557804283" onclick="goToNextAlign('dtr_557804283',false);"><span>Previous</span></a>
1272 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J54|A" id="alnDsc_557804283" onclick="goToDefLine('dtr_557804283');" href="#dtr_557804283"><span>Descriptions</span></a>
1273 </span>
1274 </div>
1275 <div class="oneSeqAln" id="aln_557804283">
1276 <div id="dln_557804283">
1277 <div class="dlfRow">
1278 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)
1279 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J54|A">pdb|3J54|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
1280 </div>
1281 </div>
1282 <div class="relInf" id="relInf_557804283"><label>Related Information</label></div>
1283 <!--
1284 <pre>
1285 <@aln_gene_info@>
1286 </pre>
1287 -->
1288 <div class="alnAll" id="alnAll_557804283"><div id="hd_557804283_1">
1289 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
1290 <span id="hsp557804283_1" class="alnParLinks">
1291 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1292 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1293 <a class="gbd toolsCtr navBack hidden" href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
1294 </span>
1295 </div>
1296 <table class="alnParams">
1297 <caption class="hdnHeader">Alignment statistics for match #1</caption>
1298 <tbody><tr>
1299 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1300 </tr>
1301 <tr>
1302 <td>32.2 bits(16)</td>
1303 <td>8e-04<span class="sumN ">()</span></td>
1304 <td>16/16(100%)</td>
1305 <td>0/16(0%)</td>
1306 <td>Plus/Plus</td>
1307 <td class="aln_frame "></td>
1308 </tr></tbody></table>
1309 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1310 </div>
1311 <div id="ar_557804283_1">
1312 <pre>Query 1 CGTCCGTCGTGAAGAG 16
1313 ||||||||||||||||
1314 Sbjct 961 CGTCCGTCGTGAAGAG 976
1315
1316
1317 </pre>
1318 </div>
1319 <div id="hd_557804283_2">
1320 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
1321 <span id="hsp557804283_2" class="alnParLinks">
1322 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1323 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1324 <a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
1325 </span>
1326 </div>
1327 <table class="alnParams">
1328 <caption class="hdnHeader">Alignment statistics for match #2</caption>
1329 <tbody><tr>
1330 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1331 </tr>
1332 <tr>
1333 <td>16.4 bits(8)</td>
1334 <td> 47<span class="sumN ">()</span></td>
1335 <td>8/8(100%)</td>
1336 <td>0/8(0%)</td>
1337 <td>Plus/Plus</td>
1338 <td class="aln_frame "></td>
1339 </tr></tbody></table>
1340 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1341 </div>
1342 <div id="ar_557804283_2">
1343 <pre>Query 5 CGTCGTGA 12
1344 ||||||||
1345 Sbjct 2591 CGTCGTGA 2598
1346
1347
1348 </pre>
1349 </div>
1350 <div id="hd_557804283_3">
1351 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
1352 <span id="hsp557804283_3" class="alnParLinks">
1353 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1354 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1355 <a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
1356 </span>
1357 </div>
1358 <table class="alnParams">
1359 <caption class="hdnHeader">Alignment statistics for match #3</caption>
1360 <tbody><tr>
1361 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1362 </tr>
1363 <tr>
1364 <td>14.4 bits(7)</td>
1365 <td> 186<span class="sumN ">()</span></td>
1366 <td>7/7(100%)</td>
1367 <td>0/7(0%)</td>
1368 <td>Plus/Plus</td>
1369 <td class="aln_frame "></td>
1370 </tr></tbody></table>
1371 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1372 </div>
1373 <div id="ar_557804283_3">
1374 <pre>Query 7 TCGTGAA 13
1375 |||||||
1376 Sbjct 839 TCGTGAA 845
1377
1378
1379 </pre>
1380 </div>
1381 <div id="hd_557804283_4">
1382 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
1383 <span id="hsp557804283_4" class="alnParLinks">
1384 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1385 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1386 <a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
1387 </span>
1388 </div>
1389 <table class="alnParams">
1390 <caption class="hdnHeader">Alignment statistics for match #4</caption>
1391 <tbody><tr>
1392 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1393 </tr>
1394 <tr>
1395 <td>14.4 bits(7)</td>
1396 <td> 186<span class="sumN ">()</span></td>
1397 <td>7/7(100%)</td>
1398 <td>0/7(0%)</td>
1399 <td>Plus/Plus</td>
1400 <td class="aln_frame "></td>
1401 </tr></tbody></table>
1402 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1403 </div>
1404 <div id="ar_557804283_4">
1405 <pre>Query 9 GTGAAGA 15
1406 |||||||
1407 Sbjct 2027 GTGAAGA 2033
1408
1409
1410 </pre>
1411 </div>
1412 </div> <!-- alnAll_557804283 -->
1413 </div> <!-- aln_557804283 -->
1414 <div class="alnHdr cnf" id="alnHdr_557804227" seqid="557804227" accs="pdb|3J52|A">
1415 <a name="557804227"></a>
1416 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804227" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804227" title="Download information for pdb|3J52|A"><span>Download</span></a>
1417 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804227" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
1418 <div><input seqfsta="gi|557804227" name="dwn_557804227" checked="checked" id="dwFST_557804227" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804227">FASTA (complete sequence)</label></div>
1419 <div><input seqfsta="gi|557804227" name="dwn_557804227" id="dwFSTAl_557804227" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804227">FASTA (aligned sequences)</label></div>
1420 <div class=""><input name="dwn_557804227" id="dwGenBank_557804227" getgi="557804227" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804227">GenBank (complete sequence)</label></div>
1421 <div>
1422 <button class="cfg" id="dw_cont_557804227">Continue</button>
1423 <button class="cfg cnc">Cancel</button>
1424 </div>
1425 </div> <!-- dsDownload -->
1426 <span class="csLinks" id="csLinks_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics">Graphics</a></span>
1427
1428 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
1429 <select id="sa_557804227" onchange="SortHSPAlnSel(event,this)">
1430 <option selected="selected" value="0">E value</option>
1431 <option value="1"> Score</option>
1432 <option value="3">Percent identity</option>
1433 <option value="2">Query start position</option>
1434 <option value="4">Subject start position</option>
1435 </select>
1436 </div>
1437 <span class="alnSeqLinks">
1438 <a title="Go to next alignment for pdb|3J51|A" class="gbd toolsCtr navNext" ref="ordinalpos=5&amp;currseq=557804227" id="alnNxt_557804227" onclick="goToNextAlign('dtr_557804227',true);"><span>Next</span></a>
1439 <a title="Go to previous alignment for pdb|3J54|A" class="gbd toolsCtr navPrev" ref="ordinalpos=5&amp;currseq=557804227" id="alnPrv_557804227" onclick="goToNextAlign('dtr_557804227',false);"><span>Previous</span></a>
1440 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J52|A" id="alnDsc_557804227" onclick="goToDefLine('dtr_557804227');" href="#dtr_557804227"><span>Descriptions</span></a>
1441 </span>
1442 </div>
1443 <div class="oneSeqAln" id="aln_557804227">
1444 <div id="dln_557804227">
1445 <div class="dlfRow">
1446 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)
1447 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J52|A">pdb|3J52|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
1448 </div>
1449 </div>
1450 <div class="relInf" id="relInf_557804227"><label>Related Information</label></div>
1451 <!--
1452 <pre>
1453 <@aln_gene_info@>
1454 </pre>
1455 -->
1456 <div class="alnAll" id="alnAll_557804227"><div id="hd_557804227_1">
1457 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
1458 <span id="hsp557804227_1" class="alnParLinks">
1459 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1460 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1461 <a class="gbd toolsCtr navBack hidden" href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
1462 </span>
1463 </div>
1464 <table class="alnParams">
1465 <caption class="hdnHeader">Alignment statistics for match #1</caption>
1466 <tbody><tr>
1467 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1468 </tr>
1469 <tr>
1470 <td>32.2 bits(16)</td>
1471 <td>8e-04<span class="sumN ">()</span></td>
1472 <td>16/16(100%)</td>
1473 <td>0/16(0%)</td>
1474 <td>Plus/Plus</td>
1475 <td class="aln_frame "></td>
1476 </tr></tbody></table>
1477 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1478 </div>
1479 <div id="ar_557804227_1">
1480 <pre>Query 1 CGTCCGTCGTGAAGAG 16
1481 ||||||||||||||||
1482 Sbjct 961 CGTCCGTCGTGAAGAG 976
1483
1484
1485 </pre>
1486 </div>
1487 <div id="hd_557804227_2">
1488 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
1489 <span id="hsp557804227_2" class="alnParLinks">
1490 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1491 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1492 <a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
1493 </span>
1494 </div>
1495 <table class="alnParams">
1496 <caption class="hdnHeader">Alignment statistics for match #2</caption>
1497 <tbody><tr>
1498 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1499 </tr>
1500 <tr>
1501 <td>16.4 bits(8)</td>
1502 <td> 47<span class="sumN ">()</span></td>
1503 <td>8/8(100%)</td>
1504 <td>0/8(0%)</td>
1505 <td>Plus/Plus</td>
1506 <td class="aln_frame "></td>
1507 </tr></tbody></table>
1508 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1509 </div>
1510 <div id="ar_557804227_2">
1511 <pre>Query 5 CGTCGTGA 12
1512 ||||||||
1513 Sbjct 2591 CGTCGTGA 2598
1514
1515
1516 </pre>
1517 </div>
1518 <div id="hd_557804227_3">
1519 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
1520 <span id="hsp557804227_3" class="alnParLinks">
1521 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1522 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1523 <a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
1524 </span>
1525 </div>
1526 <table class="alnParams">
1527 <caption class="hdnHeader">Alignment statistics for match #3</caption>
1528 <tbody><tr>
1529 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1530 </tr>
1531 <tr>
1532 <td>14.4 bits(7)</td>
1533 <td> 186<span class="sumN ">()</span></td>
1534 <td>7/7(100%)</td>
1535 <td>0/7(0%)</td>
1536 <td>Plus/Plus</td>
1537 <td class="aln_frame "></td>
1538 </tr></tbody></table>
1539 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1540 </div>
1541 <div id="ar_557804227_3">
1542 <pre>Query 7 TCGTGAA 13
1543 |||||||
1544 Sbjct 839 TCGTGAA 845
1545
1546
1547 </pre>
1548 </div>
1549 <div id="hd_557804227_4">
1550 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
1551 <span id="hsp557804227_4" class="alnParLinks">
1552 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
1553 <a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
1554 <a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
1555 </span>
1556 </div>
1557 <table class="alnParams">
1558 <caption class="hdnHeader">Alignment statistics for match #4</caption>
1559 <tbody><tr>
1560 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
1561 </tr>
1562 <tr>
1563 <td>14.4 bits(7)</td>
1564 <td> 186<span class="sumN ">()</span></td>
1565 <td>7/7(100%)</td>
1566 <td>0/7(0%)</td>
1567 <td>Plus/Plus</td>
1568 <td class="aln_frame "></td>
1569 </tr></tbody></table>
1570 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
1571 </div>
1572 <div id="ar_557804227_4">
1573 <pre>Query 9 GTGAAGA 15
1574 |||||||
1575 Sbjct 2027 GTGAAGA 2033
1576
1577
1578 </pre>
1579 </div>
1580 </div> <!-- alnAll_557804227 -->
1581 </div> <!-- aln_557804227 -->
1582 </form>
1583
1584 </div></div>
1585 <pre></pre>
1586 </div><!--/#alignments-->
1587 </div><!-- alignInfo -->
1588 </div><!--ARIA-->
1589
1590 </div><!-- alignView -->
1591
1592 </div><!-- /#content -->
1593
1594
1595
1596
1597
1598 </div><!-- /#content-wrap -->
1599
1600
1601
1602 </div><!--/#wrap-->
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