diff test-data/blast xml example4.html @ 114:4f0ed3b5ae46

update test results
author Jan Kanis <jan.code@jankanis.nl>
date Wed, 09 Jul 2014 15:20:38 +0200
parents b3b5ee557170
children 7f3f8c10f44b
line wrap: on
line diff
--- a/test-data/blast xml example4.html	Wed Jul 09 15:19:53 2014 +0200
+++ b/test-data/blast xml example4.html	Wed Jul 09 15:20:38 2014 +0200
@@ -40,20 +40,28 @@
       }
 
       h1 {
+      font-size: 200%;
+      }
+
+      h2 {
+      font-size: 150%;
+      }
+      
+      h1, h2 {
       border-bottom: 1px solid #CCCCCC;
-      font-size: 150%;
       padding-bottom: 0.1em;
       }
 
-      h2 {
+      h3 {
       font-size: 120%;
       font-weight: bold;
       }
 
-      h4.darkHeader {
+      h5.darkHeader {
       color: #4D4D4D;
       letter-spacing: 0;
       font-weight: bold;
+      font-size: 108%;
       }
 
       #nodata {
@@ -385,9 +393,20 @@
     
     <div id=content>
 
+      <section class=header>
+
+        <h1>Nucleotide Blast results</h1>
+
+        <table class=headerdata>
+          <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
+          <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+        </table>
+
+      </section>
+
 
       <section class=index>
-        <h1>Queries</h1>
+        <h2>Queries</h2>
 
         <div class=indexentry><a href="#match1">
             Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
@@ -423,33 +442,32 @@
       
       <section class=match id=match1>
       
-        <h1>Nucleotide Sequence (20 letters)</h1>
+        <h2>Nucleotide Sequence (20 letters)</h2>
 
         <section class=header>
 
           <table class=headerdata>
+            <tr><td class=param>Query number:</td><td>1</td></tr>
             <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
-            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
-            <tr><td class=param>Query length:</td><td>20</td></tr>
-            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
-            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+            <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
+            <tr><td class=param>Length:</td><td>20</td></tr>
           </table>
 
         </section>
 
 
         <section class=graphics>
-          <h2>Graphic Summary</h2>
+          <h3>Graphic Summary</h3>
 
           <div class=grey>
-            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
+            <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
 
             <div class=defline id=defline1>
               Mouse-over to show defline and scores, click to show alignments
             </div>
 
             <div class=graphic>
-              <h4 class=darkHeader>Color key for alignment scores</h4>
+              <h5 class=darkHeader>Color key for alignment scores</h5>
               <div class=legend><div class=graphicrow>
                   <div class=graphicitem style="background-color: black">&lt;40</div>
                   <div class=graphicitem style="background-color: blue">40–50</div>
@@ -530,10 +548,10 @@
 
 
         <section class=descriptions>
-          <h2>Descriptions</h2>
+          <h3>Descriptions</h3>
 
           <div class=grey><div class=white>
-              <h4 class=darkHeader>Sequences producing significant alignments:</h4>
+              <h5 class=darkHeader>Sequences producing significant alignments:</h5>
 
               <table class=descriptiontable>
                 <col/><col/><col/><col/><col/><col/><col/>
@@ -580,7 +598,7 @@
 
 
         <section class=alignments>
-          <h2>Alignments</h2>
+          <h3>Alignments</h3>
 
           <div class=grey><div class=white>
               <div class=alignment id=hit1-1>
@@ -673,22 +691,21 @@
       
       <section class=match id=match2>
       
-        <h1>Nucleotide Sequence (20 letters)</h1>
+        <h2>Nucleotide Sequence (20 letters)</h2>
 
         <section class=header>
 
           <table class=headerdata>
-            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
-            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
-            <tr><td class=param>Query length:</td><td>20</td></tr>
-            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
-            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+            <tr><td class=param>Query number:</td><td>2</td></tr>
+            <tr><td class=param>Query ID:</td><td>Query_2</td></tr>
+            <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr>
+            <tr><td class=param>Length:</td><td>20</td></tr>
           </table>
 
         </section>
 
         <section>
-          <h2>No Hits</h2>
+          <h3>No Hits</h3>
           <div class=grey>
             <table class=headerdata>
               <tr><td class=param>Message:</td><td>No hits found</td></tr>
@@ -699,33 +716,32 @@
       
       <section class=match id=match3>
       
-        <h1>Nucleotide Sequence (20 letters)</h1>
+        <h2>Nucleotide Sequence (20 letters)</h2>
 
         <section class=header>
 
           <table class=headerdata>
-            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
-            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
-            <tr><td class=param>Query length:</td><td>20</td></tr>
-            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
-            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+            <tr><td class=param>Query number:</td><td>3</td></tr>
+            <tr><td class=param>Query ID:</td><td>Query_3</td></tr>
+            <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr>
+            <tr><td class=param>Length:</td><td>20</td></tr>
           </table>
 
         </section>
 
 
         <section class=graphics>
-          <h2>Graphic Summary</h2>
+          <h3>Graphic Summary</h3>
 
           <div class=grey>
-            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
+            <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
 
             <div class=defline id=defline3>
               Mouse-over to show defline and scores, click to show alignments
             </div>
 
             <div class=graphic>
-              <h4 class=darkHeader>Color key for alignment scores</h4>
+              <h5 class=darkHeader>Color key for alignment scores</h5>
               <div class=legend><div class=graphicrow>
                   <div class=graphicitem style="background-color: black">&lt;40</div>
                   <div class=graphicitem style="background-color: blue">40–50</div>
@@ -819,10 +835,10 @@
 
 
         <section class=descriptions>
-          <h2>Descriptions</h2>
+          <h3>Descriptions</h3>
 
           <div class=grey><div class=white>
-              <h4 class=darkHeader>Sequences producing significant alignments:</h4>
+              <h5 class=darkHeader>Sequences producing significant alignments:</h5>
 
               <table class=descriptiontable>
                 <col/><col/><col/><col/><col/><col/><col/>
@@ -882,7 +898,7 @@
 
 
         <section class=alignments>
-          <h2>Alignments</h2>
+          <h3>Alignments</h3>
 
           <div class=grey><div class=white>
               <div class=alignment id=hit3-1>
@@ -1017,22 +1033,21 @@
       
       <section class=match id=match4>
       
-        <h1>Nucleotide Sequence (24 letters)</h1>
+        <h2>Nucleotide Sequence (24 letters)</h2>
 
         <section class=header>
 
           <table class=headerdata>
-            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
-            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
-            <tr><td class=param>Query length:</td><td>20</td></tr>
-            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
-            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+            <tr><td class=param>Query number:</td><td>4</td></tr>
+            <tr><td class=param>Query ID:</td><td>Query_4</td></tr>
+            <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
+            <tr><td class=param>Length:</td><td>24</td></tr>
           </table>
 
         </section>
 
         <section>
-          <h2>No Hits</h2>
+          <h3>No Hits</h3>
           <div class=grey>
             <table class=headerdata>
               <tr><td class=param>Message:</td><td>No hits found</td></tr>
@@ -1043,22 +1058,21 @@
       
       <section class=match id=match5>
       
-        <h1>Nucleotide Sequence (20 letters)</h1>
+        <h2>Nucleotide Sequence (20 letters)</h2>
 
         <section class=header>
 
           <table class=headerdata>
-            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
-            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
-            <tr><td class=param>Query length:</td><td>20</td></tr>
-            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
-            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+            <tr><td class=param>Query number:</td><td>5</td></tr>
+            <tr><td class=param>Query ID:</td><td>Query_5</td></tr>
+            <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
+            <tr><td class=param>Length:</td><td>20</td></tr>
           </table>
 
         </section>
 
         <section>
-          <h2>No Hits</h2>
+          <h3>No Hits</h3>
           <div class=grey>
             <table class=headerdata>
               <tr><td class=param>Message:</td><td>No hits found</td></tr>
@@ -1069,33 +1083,32 @@
       
       <section class=match id=match6>
       
-        <h1>Nucleotide Sequence (25 letters)</h1>
+        <h2>Nucleotide Sequence (25 letters)</h2>
 
         <section class=header>
 
           <table class=headerdata>
-            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
-            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
-            <tr><td class=param>Query length:</td><td>20</td></tr>
-            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
-            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+            <tr><td class=param>Query number:</td><td>6</td></tr>
+            <tr><td class=param>Query ID:</td><td>Query_6</td></tr>
+            <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
+            <tr><td class=param>Length:</td><td>25</td></tr>
           </table>
 
         </section>
 
 
         <section class=graphics>
-          <h2>Graphic Summary</h2>
+          <h3>Graphic Summary</h3>
 
           <div class=grey>
-            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
+            <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
 
             <div class=defline id=defline6>
               Mouse-over to show defline and scores, click to show alignments
             </div>
 
             <div class=graphic>
-              <h4 class=darkHeader>Color key for alignment scores</h4>
+              <h5 class=darkHeader>Color key for alignment scores</h5>
               <div class=legend><div class=graphicrow>
                   <div class=graphicitem style="background-color: black">&lt;40</div>
                   <div class=graphicitem style="background-color: blue">40–50</div>
@@ -1177,10 +1190,10 @@
 
 
         <section class=descriptions>
-          <h2>Descriptions</h2>
+          <h3>Descriptions</h3>
 
           <div class=grey><div class=white>
-              <h4 class=darkHeader>Sequences producing significant alignments:</h4>
+              <h5 class=darkHeader>Sequences producing significant alignments:</h5>
 
               <table class=descriptiontable>
                 <col/><col/><col/><col/><col/><col/><col/>
@@ -1227,7 +1240,7 @@
 
 
         <section class=alignments>
-          <h2>Alignments</h2>
+          <h3>Alignments</h3>
 
           <div class=grey><div class=white>
               <div class=alignment id=hit6-1>
@@ -1320,33 +1333,32 @@
       
       <section class=match id=match7>
       
-        <h1>Nucleotide Sequence (74 letters)</h1>
+        <h2>Nucleotide Sequence (74 letters)</h2>
 
         <section class=header>
 
           <table class=headerdata>
-            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
-            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
-            <tr><td class=param>Query length:</td><td>20</td></tr>
-            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
-            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
+            <tr><td class=param>Query number:</td><td>7</td></tr>
+            <tr><td class=param>Query ID:</td><td>Query_7</td></tr>
+            <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
+            <tr><td class=param>Length:</td><td>74</td></tr>
           </table>
 
         </section>
 
 
         <section class=graphics>
-          <h2>Graphic Summary</h2>
+          <h3>Graphic Summary</h3>
 
           <div class=grey>
-            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
+            <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
 
             <div class=defline id=defline7>
               Mouse-over to show defline and scores, click to show alignments
             </div>
 
             <div class=graphic>
-              <h4 class=darkHeader>Color key for alignment scores</h4>
+              <h5 class=darkHeader>Color key for alignment scores</h5>
               <div class=legend><div class=graphicrow>
                   <div class=graphicitem style="background-color: black">&lt;40</div>
                   <div class=graphicitem style="background-color: blue">40–50</div>
@@ -1428,10 +1440,10 @@
 
 
         <section class=descriptions>
-          <h2>Descriptions</h2>
+          <h3>Descriptions</h3>
 
           <div class=grey><div class=white>
-              <h4 class=darkHeader>Sequences producing significant alignments:</h4>
+              <h5 class=darkHeader>Sequences producing significant alignments:</h5>
 
               <table class=descriptiontable>
                 <col/><col/><col/><col/><col/><col/><col/>
@@ -1478,7 +1490,7 @@
 
 
         <section class=alignments>
-          <h2>Alignments</h2>
+          <h3>Alignments</h3>
 
           <div class=grey><div class=white>
               <div class=alignment id=hit7-1>